Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19780

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,756,714	-		LU632_RS19775	0.17	-1.8
3,756,754	-		LU632_RS19775	0.20	-2.4
3,756,754	-		LU632_RS19775	0.20	-2.8
3,756,894	+		LU632_RS19775	0.32	-3.6
3,756,894	+		LU632_RS19775	0.32	-2.1
3,756,894	+		LU632_RS19775	0.32	-1.7
3,757,001	+		LU632_RS19775	0.41	+0.1
3,757,002	-		LU632_RS19775	0.41	-2.0
3,757,028	-		LU632_RS19775	0.43	-2.5
3,757,029	+		LU632_RS19775	0.43	-1.0
3,757,029	+		LU632_RS19775	0.43	-2.1
3,757,029	+		LU632_RS19775	0.43	-3.8
3,757,030	-		LU632_RS19775	0.43	-3.2
3,757,030	-		LU632_RS19775	0.43	-2.5
3,757,030	-		LU632_RS19775	0.43	-1.2
3,757,030	-		LU632_RS19775	0.43	-3.0
3,757,031	+		LU632_RS19775	0.43	+0.8
3,757,031	+		LU632_RS19775	0.43	-1.8
3,757,031	+		LU632_RS19775	0.43	-1.5
3,757,031	+		LU632_RS19775	0.43	-2.3
3,757,031	+		LU632_RS19775	0.43	-2.6
3,757,031	+		LU632_RS19775	0.43	+0.6
3,757,032	-		LU632_RS19775	0.44	-3.6
3,757,032	-		LU632_RS19775	0.44	-2.1
3,757,070	+		LU632_RS19775	0.47	+0.1
3,757,140	-		LU632_RS19775	0.53	-2.1
3,757,155	-		LU632_RS19775	0.54	-1.9
3,757,161	-		LU632_RS19775	0.54	-1.4
3,757,161	-		LU632_RS19775	0.54	-2.3
3,757,327	-		LU632_RS19775	0.69	-3.3
3,757,329	-		LU632_RS19775	0.69	-2.7
3,757,329	-		LU632_RS19775	0.69	-2.1
3,757,329	-		LU632_RS19775	0.69	-0.5
3,757,470	-		LU632_RS19775	0.81	-3.1
3,757,470	-		LU632_RS19775	0.81	+0.1
3,757,624	-				-2.1
3,757,662	-				-4.7
3,757,665	+				-3.2
3,757,711	-				-1.8
3,757,722	-				-3.2
3,757,821	+				-0.7
3,757,843	-		LU632_RS19780	0.12	-2.9
3,757,921	-		LU632_RS19780	0.19	-0.1
3,757,971	+		LU632_RS19780	0.23	-2.3
3,757,972	-		LU632_RS19780	0.23	-1.7
3,757,976	-		LU632_RS19780	0.24	-0.4
3,758,008	-		LU632_RS19780	0.27	-1.1
3,758,134	+		LU632_RS19780	0.38	+0.6
3,758,135	-		LU632_RS19780	0.38	-3.7
3,758,203	-		LU632_RS19780	0.44	-1.8
3,758,214	-		LU632_RS19780	0.45	+0.1
3,758,373	+		LU632_RS19780	0.60	-2.8
3,758,374	-		LU632_RS19780	0.60	-1.0
3,758,374	-		LU632_RS19780	0.60	-1.6
3,758,374	-		LU632_RS19780	0.60	-2.7
3,758,385	+		LU632_RS19780	0.61	-1.5
3,758,386	-		LU632_RS19780	0.61	-1.7
3,758,397	+		LU632_RS19780	0.62	-2.7
3,758,397	+		LU632_RS19780	0.62	-3.2
3,758,443	+		LU632_RS19780	0.66	-3.1
3,758,443	+		LU632_RS19780	0.66	-2.3
3,758,443	+		LU632_RS19780	0.66	-1.1
3,758,447	+		LU632_RS19780	0.67	-2.1
3,758,447	+		LU632_RS19780	0.67	-3.8
3,758,447	+		LU632_RS19780	0.67	+1.1
3,758,448	-		LU632_RS19780	0.67	-2.7
3,758,484	+		LU632_RS19780	0.70	-1.6
3,758,520	-		LU632_RS19780	0.73	-0.9
3,758,548	-		LU632_RS19780	0.76	-0.4
3,758,616	+		LU632_RS19780	0.82	-1.8
3,758,651	+		LU632_RS19780	0.85	-0.7
3,758,651	+		LU632_RS19780	0.85	-3.0
3,758,652	-		LU632_RS19780	0.85	-1.8
3,758,655	+		LU632_RS19780	0.85	+0.1
3,758,697	+		LU632_RS19780	0.89	+1.1
3,758,697	+		LU632_RS19780	0.89	-2.8
3,758,698	-		LU632_RS19780	0.89	-1.4
3,758,698	-		LU632_RS19780	0.89	-2.5
3,758,714	-				-3.4
3,758,741	+				-1.5
3,758,742	-				-4.1
3,758,774	-				-2.8
3,758,774	-				-4.0
3,758,819	+				-1.5
3,758,820	-				-1.5
3,758,837	-				-1.4
3,758,841	-				-1.2
3,758,841	-				-2.7
3,758,892	+				-0.4
3,758,909	-				-0.9
3,758,999	+		LU632_RS19785	0.19	-0.9
3,759,002	+		LU632_RS19785	0.19	-1.2
3,759,003	-		LU632_RS19785	0.19	-1.9
3,759,003	-		LU632_RS19785	0.19	-0.4
3,759,032	+		LU632_RS19785	0.23	+0.1
3,759,032	+		LU632_RS19785	0.23	-2.3
3,759,032	+		LU632_RS19785	0.23	-2.6
3,759,032	+		LU632_RS19785	0.23	-0.4
3,759,032	+		LU632_RS19785	0.23	-0.4
3,759,032	+		LU632_RS19785	0.23	-2.9
3,759,032	+		LU632_RS19785	0.23	-0.7
3,759,033	-		LU632_RS19785	0.24	+1.0
3,759,033	-		LU632_RS19785	0.24	-0.4
3,759,033	-		LU632_RS19785	0.24	-0.7
3,759,033	-		LU632_RS19785	0.24	-1.5
3,759,033	-		LU632_RS19785	0.24	+0.6
3,759,033	-		LU632_RS19785	0.24	-2.7
3,759,074	+		LU632_RS19785	0.29	-2.2
3,759,179	+		LU632_RS19785	0.44	-0.7
3,759,189	-		LU632_RS19785	0.45	-1.4
3,759,223	+		LU632_RS19785	0.50	-2.3
3,759,236	+		LU632_RS19785	0.52	-2.7
3,759,237	-		LU632_RS19785	0.52	-2.9
3,759,237	-		LU632_RS19785	0.52	-2.8
3,759,239	-		LU632_RS19785	0.52	+0.1
3,759,255	-		LU632_RS19785	0.54	-2.6
3,759,377	-		LU632_RS19785	0.71	-1.6
3,759,386	-		LU632_RS19785	0.72	+0.4
3,759,386	-		LU632_RS19785	0.72	-3.7
3,759,598	-				-1.4
3,759,609	+				-0.4
3,759,661	-				-1.4
3,759,668	-				-0.3
3,759,777	+				+0.1
3,759,777	+				-0.7
3,759,777	+				+0.1