Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19610

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,718,535	+		LU632_RS19605	0.22	-3.0
3,718,536	-		LU632_RS19605	0.22	-2.4
3,718,544	+		LU632_RS19605	0.22	-0.1
3,718,544	+		LU632_RS19605	0.22	-3.6
3,718,545	-		LU632_RS19605	0.22	-4.0
3,718,545	-		LU632_RS19605	0.22	-1.8
3,718,545	-		LU632_RS19605	0.22	-2.5
3,718,545	-		LU632_RS19605	0.22	-1.1
3,719,079	-		LU632_RS19605	0.66	-0.3
3,719,196	+		LU632_RS19605	0.76	-0.2
3,719,213	+		LU632_RS19605	0.77	-3.5
3,719,214	-		LU632_RS19605	0.77	-4.0
3,719,218	-		LU632_RS19605	0.78	-2.0
3,719,226	-		LU632_RS19605	0.78	-4.1
3,719,258	+		LU632_RS19605	0.81	-3.2
3,719,399	+				-1.7
3,719,555	+				-3.6
3,719,630	+	argB	LU632_RS19610	0.16	-1.1
3,719,644	+	argB	LU632_RS19610	0.18	-2.5
3,719,646	-	argB	LU632_RS19610	0.18	-3.9
3,719,656	+	argB	LU632_RS19610	0.19	-4.4
3,719,892	-	argB	LU632_RS19610	0.50	+0.1
3,719,979	-	argB	LU632_RS19610	0.61	-1.5
3,720,028	+	argB	LU632_RS19610	0.67	-3.2
3,720,269	+				-1.0
3,720,269	+				-3.4
3,720,270	-				-4.2
3,720,270	-				-1.6
3,720,300	+				+1.1
3,720,337	+				-2.2
3,720,338	-				-1.1
3,720,340	+				-1.1
3,720,340	+				+0.1
3,720,341	-				-1.9
3,720,341	-				-1.8
3,720,486	+	argC	LU632_RS19615	0.19	-0.9
3,720,513	+	argC	LU632_RS19615	0.21	-2.3
3,720,513	+	argC	LU632_RS19615	0.21	-1.9
3,720,514	-	argC	LU632_RS19615	0.21	-4.9
3,720,536	+	argC	LU632_RS19615	0.24	-3.8
3,720,537	-	argC	LU632_RS19615	0.24	-2.9
3,720,553	+	argC	LU632_RS19615	0.25	-2.2
3,720,635	-	argC	LU632_RS19615	0.33	-3.4
3,720,635	-	argC	LU632_RS19615	0.33	-3.0
3,720,719	-	argC	LU632_RS19615	0.42	+0.7
3,720,719	-	argC	LU632_RS19615	0.42	-0.3
3,720,906	+	argC	LU632_RS19615	0.60	-1.0
3,720,951	+	argC	LU632_RS19615	0.65	-1.7
3,720,952	-	argC	LU632_RS19615	0.65	-4.6
3,720,954	+	argC	LU632_RS19615	0.65	-1.1
3,720,954	+	argC	LU632_RS19615	0.65	-2.2
3,720,955	-	argC	LU632_RS19615	0.65	-2.2
3,720,955	-	argC	LU632_RS19615	0.65	-4.3
3,720,955	-	argC	LU632_RS19615	0.65	-1.8
3,720,961	+	argC	LU632_RS19615	0.66	-0.7
3,721,007	+	argC	LU632_RS19615	0.70	-1.8
3,721,246	-				+0.1