Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18940

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,575,817	+		LU632_RS18935	0.78	-1.3
3,575,818	-		LU632_RS18935	0.78	+0.3
3,576,146	-		LU632_RS18935	0.87	+0.4
3,576,146	-		LU632_RS18935	0.87	-0.2
3,576,241	-		LU632_RS18935	0.89	-0.8
3,576,251	+		LU632_RS18935	0.90	+2.3
3,576,252	-		LU632_RS18935	0.90	+0.1
3,576,253	+		LU632_RS18935	0.90	+0.7
3,576,254	-		LU632_RS18935	0.90	-0.7
3,576,254	-		LU632_RS18935	0.90	-0.8
3,576,302	-				-0.1
3,576,417	+				-0.1
3,576,518	-				-0.6
3,576,528	+				+0.6
3,576,528	+				+0.2
3,576,602	-				-2.2
3,576,659	+				-0.0
3,576,779	-		LU632_RS18940	0.11	+0.2
3,576,864	-		LU632_RS18940	0.24	+1.8
3,576,870	-		LU632_RS18940	0.25	-0.1
3,576,897	-		LU632_RS18940	0.29	-0.2
3,577,007	+		LU632_RS18940	0.47	-1.8
3,577,008	-		LU632_RS18940	0.47	-1.1
3,577,009	+		LU632_RS18940	0.47	-0.1
3,577,009	+		LU632_RS18940	0.47	+2.0
3,577,009	+		LU632_RS18940	0.47	-0.2
3,577,009	+		LU632_RS18940	0.47	+0.3
3,577,010	-		LU632_RS18940	0.47	-2.3
3,577,010	-		LU632_RS18940	0.47	+0.2
3,577,097	+		LU632_RS18940	0.61	+0.0
3,577,132	+		LU632_RS18940	0.66	-0.7
3,577,132	+		LU632_RS18940	0.66	+0.3
3,577,132	+		LU632_RS18940	0.66	-0.5
3,577,132	+		LU632_RS18940	0.66	-0.7
3,577,132	+		LU632_RS18940	0.66	-1.7
3,577,132	+		LU632_RS18940	0.66	+0.3
3,577,132	+		LU632_RS18940	0.66	-0.9
3,577,133	-		LU632_RS18940	0.67	-1.1
3,577,133	-		LU632_RS18940	0.67	-0.4
3,577,133	-		LU632_RS18940	0.67	-0.5
3,577,133	-		LU632_RS18940	0.67	-0.9
3,577,133	-		LU632_RS18940	0.67	+0.2
3,577,133	-		LU632_RS18940	0.67	+1.0
3,577,133	-		LU632_RS18940	0.67	-1.8
3,577,133	-		LU632_RS18940	0.67	+0.1
3,577,135	+		LU632_RS18940	0.67	-2.2
3,577,135	+		LU632_RS18940	0.67	+1.5
3,577,135	+		LU632_RS18940	0.67	-0.9
3,577,135	+		LU632_RS18940	0.67	+0.7
3,577,135	+		LU632_RS18940	0.67	-0.9
3,577,135	+		LU632_RS18940	0.67	+1.9
3,577,135	+		LU632_RS18940	0.67	+1.7
3,577,136	-		LU632_RS18940	0.67	-0.3
3,577,136	-		LU632_RS18940	0.67	-0.3
3,577,136	-		LU632_RS18940	0.67	-0.2
3,577,136	-		LU632_RS18940	0.67	+1.2
3,577,137	+		LU632_RS18940	0.67	+0.2
3,577,137	+		LU632_RS18940	0.67	-0.1
3,577,137	+		LU632_RS18940	0.67	+2.1
3,577,137	+		LU632_RS18940	0.67	+1.7
3,577,138	-		LU632_RS18940	0.67	+1.0
3,577,138	-		LU632_RS18940	0.67	-0.7
3,577,138	-		LU632_RS18940	0.67	-0.7
3,577,138	-		LU632_RS18940	0.67	-0.5
3,577,138	-		LU632_RS18940	0.67	-1.5
3,577,138	-		LU632_RS18940	0.67	+2.0
3,577,362	+				+0.4
3,577,366	+				+0.3
3,577,464	+		LU632_RS18945	0.33	+0.2
3,577,465	-		LU632_RS18945	0.33	+0.1
3,577,465	-		LU632_RS18945	0.33	+1.9
3,577,555	-		LU632_RS18945	0.62	-1.6
3,577,561	-		LU632_RS18945	0.64	+1.0
3,577,566	-		LU632_RS18945	0.66	-0.0
3,577,571	+		LU632_RS18945	0.68	-0.3
3,577,572	-		LU632_RS18945	0.68	-0.5
3,577,697	+				+0.3
3,577,799	+		LU632_RS18950	0.30	+0.4
3,577,799	+		LU632_RS18950	0.30	-0.3
3,577,800	-		LU632_RS18950	0.31	-0.2
3,577,836	+		LU632_RS18950	0.41	-1.3
3,577,841	-		LU632_RS18950	0.43	-0.9
3,577,841	-		LU632_RS18950	0.43	-1.1
3,577,845	+		LU632_RS18950	0.44	-0.5
3,577,846	-		LU632_RS18950	0.44	+1.4
3,577,846	-		LU632_RS18950	0.44	+0.3
3,577,846	-		LU632_RS18950	0.44	-0.9
3,577,846	-		LU632_RS18950	0.44	+1.1
3,577,846	-		LU632_RS18950	0.44	-0.7
3,577,846	-		LU632_RS18950	0.44	+0.1
3,577,846	-		LU632_RS18950	0.44	+0.3
3,577,847	+		LU632_RS18950	0.45	+0.1
3,577,847	+		LU632_RS18950	0.45	+2.7
3,577,848	-		LU632_RS18950	0.45	+2.4
3,577,848	-		LU632_RS18950	0.45	-1.1
3,577,848	-		LU632_RS18950	0.45	-1.9
3,577,903	-		LU632_RS18950	0.61	+0.5
3,577,922	+		LU632_RS18950	0.67	-0.7
3,578,017	+				+0.1
3,578,031	+				-0.7
3,578,174	-				-0.3
3,578,258	-				+0.1
3,578,322	+				-0.3
3,578,327	-				-2.4
3,578,327	-				+1.0
3,578,336	+				+0.3
3,578,336	+				+0.2
3,578,336	+				-1.1
3,578,337	-				-0.9
3,578,340	-				-1.1