Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18500

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,496,331	+				-1.7
3,496,361	-				-0.5
3,496,361	-				-2.5
3,496,433	+				+0.0
3,496,436	+				-1.1
3,496,437	-				+0.1
3,496,473	+				-1.4
3,496,592	+				+0.0
3,496,593	-				+1.7
3,496,644	-				-0.6
3,496,788	+				-1.5
3,496,799	+				+1.5
3,496,800	-				+1.5
3,496,865	+				-2.2
3,496,866	-				-0.2
3,496,869	+				-1.7
3,496,870	-				-1.1
3,497,023	-	tgt	LU632_RS18500	0.15	+0.7
3,497,067	-	tgt	LU632_RS18500	0.19	-0.9
3,497,209	-	tgt	LU632_RS18500	0.32	-1.8
3,497,286	+	tgt	LU632_RS18500	0.39	+0.7
3,497,724	+	tgt	LU632_RS18500	0.78	-0.3
3,497,725	-	tgt	LU632_RS18500	0.78	+0.7
3,497,779	+	tgt	LU632_RS18500	0.82	+0.1
3,497,780	-	tgt	LU632_RS18500	0.82	-0.9
3,497,841	+	tgt	LU632_RS18500	0.88	+0.7
3,497,842	-	tgt	LU632_RS18500	0.88	-0.3
3,497,844	+	tgt	LU632_RS18500	0.88	-1.5
3,497,845	-	tgt	LU632_RS18500	0.88	-0.0
3,497,907	+				+0.1
3,498,177	+	yajC	LU632_RS18505	0.52	-2.2