Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18100

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,419,418	+				+0.7
3,420,161	-				+0.7
3,420,168	-				-0.1
3,420,182	+				-1.5
3,420,182	+				-0.7
3,420,183	-				+0.6
3,420,183	-				-2.1
3,420,183	-				-1.1
3,420,186	+				-0.3
3,420,187	-				+0.3
3,420,209	-				+0.4
3,420,218	+				+0.4
3,420,219	-				+1.2
3,420,219	-				+0.6
3,420,230	+				+0.9
3,420,230	+				-0.3
3,420,231	-				-0.9
3,420,231	-				+0.3
3,420,282	-				+0.7
3,420,423	+				+0.1
3,420,570	-				+0.5
3,420,629	-	htpG	LU632_RS18100	0.13	-1.9
3,420,629	-	htpG	LU632_RS18100	0.13	-0.3
3,420,663	+	htpG	LU632_RS18100	0.14	+1.0
3,420,838	-	htpG	LU632_RS18100	0.24	+0.1
3,420,857	+	htpG	LU632_RS18100	0.25	-0.7
3,420,858	-	htpG	LU632_RS18100	0.25	-0.7
3,420,858	-	htpG	LU632_RS18100	0.25	+0.1
3,420,879	+	htpG	LU632_RS18100	0.26	-0.1
3,420,956	+	htpG	LU632_RS18100	0.30	+0.7
3,420,974	+	htpG	LU632_RS18100	0.31	+0.1
3,420,975	-	htpG	LU632_RS18100	0.31	+0.7
3,421,013	+	htpG	LU632_RS18100	0.33	-1.5
3,421,124	-	htpG	LU632_RS18100	0.39	-1.1
3,421,157	+	htpG	LU632_RS18100	0.41	+0.7
3,421,353	+	htpG	LU632_RS18100	0.51	-0.8
3,421,408	-	htpG	LU632_RS18100	0.54	-2.0
3,421,434	-	htpG	LU632_RS18100	0.55	-0.3
3,421,434	-	htpG	LU632_RS18100	0.55	+0.7
3,421,434	-	htpG	LU632_RS18100	0.55	-0.3
3,421,434	-	htpG	LU632_RS18100	0.55	+0.3
3,421,447	-	htpG	LU632_RS18100	0.56	+1.1
3,421,531	-	htpG	LU632_RS18100	0.61	-0.7
3,421,557	+	htpG	LU632_RS18100	0.62	-0.7
3,421,557	+	htpG	LU632_RS18100	0.62	-0.3
3,421,558	-	htpG	LU632_RS18100	0.62	-0.3
3,421,560	+	htpG	LU632_RS18100	0.62	-1.9
3,421,560	+	htpG	LU632_RS18100	0.62	-0.7
3,421,560	+	htpG	LU632_RS18100	0.62	+0.7
3,421,561	-	htpG	LU632_RS18100	0.62	+0.1
3,421,561	-	htpG	LU632_RS18100	0.62	-0.3
3,421,698	+	htpG	LU632_RS18100	0.69	-0.1
3,421,699	-	htpG	LU632_RS18100	0.70	-2.1
3,421,782	-	htpG	LU632_RS18100	0.74	+1.7
3,421,939	+	htpG	LU632_RS18100	0.82	+1.7
3,421,939	+	htpG	LU632_RS18100	0.82	-0.9
3,421,995	+	htpG	LU632_RS18100	0.85	-0.7
3,422,043	+	htpG	LU632_RS18100	0.88	-0.2
3,422,044	-	htpG	LU632_RS18100	0.88	-0.9
3,422,265	+				+0.1
3,422,289	+				+1.7
3,422,299	-				+1.4
3,422,302	-				-0.6
3,422,511	+	recR	LU632_RS18105	0.23	+1.0
3,422,511	+	recR	LU632_RS18105	0.23	+0.8
3,422,511	+	recR	LU632_RS18105	0.23	-1.3
3,422,511	+	recR	LU632_RS18105	0.23	+0.0
3,422,512	-	recR	LU632_RS18105	0.23	+2.4
3,422,512	-	recR	LU632_RS18105	0.23	-1.8
3,422,512	-	recR	LU632_RS18105	0.23	-0.1
3,422,516	-	recR	LU632_RS18105	0.24	+2.5
3,422,665	-	recR	LU632_RS18105	0.48	+2.2
3,422,768	-	recR	LU632_RS18105	0.65	-0.5
3,423,236	-		LU632_RS18110	0.78	+1.1