Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17980

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,394,783	+	purL	LU632_RS17975	0.81	-3.6
3,394,891	+	purL	LU632_RS17975	0.84	-4.8
3,394,891	+	purL	LU632_RS17975	0.84	-2.6
3,394,892	-	purL	LU632_RS17975	0.84	-5.1
3,394,892	-	purL	LU632_RS17975	0.84	-3.8
3,394,892	-	purL	LU632_RS17975	0.84	-1.3
3,394,892	-	purL	LU632_RS17975	0.84	-2.5
3,394,893	+	purL	LU632_RS17975	0.84	-3.6
3,394,893	+	purL	LU632_RS17975	0.84	-4.3
3,394,893	+	purL	LU632_RS17975	0.84	+0.1
3,394,894	-	purL	LU632_RS17975	0.84	-6.1
3,395,024	+	purL	LU632_RS17975	0.87	-3.0
3,395,025	-	purL	LU632_RS17975	0.87	-0.3
3,395,025	-	purL	LU632_RS17975	0.87	-1.8
3,395,025	-	purL	LU632_RS17975	0.87	-3.4
3,395,026	+	purL	LU632_RS17975	0.87	-4.5
3,395,123	+	purL	LU632_RS17975	0.90	-0.9
3,395,176	-				-3.0
3,395,224	+				-0.9
3,395,225	-				-1.1
3,395,291	+				-1.3
3,395,291	+				-3.4
3,395,292	-				-2.3
3,395,331	+				-2.0
3,395,332	-				+0.7
3,395,332	-				-2.8
3,395,332	-				-5.3
3,395,413	-				-1.3
3,395,461	+				-2.8
3,395,462	-				-1.3
3,395,581	+				-2.3
3,395,584	-				-0.4
3,395,584	-				-1.3
3,395,584	-				-1.3
3,395,584	-				-0.1
3,395,625	-				-0.8
3,395,732	+				+0.1
3,395,732	+				+0.7
3,395,732	+				-1.1
3,395,733	-				+1.2
3,395,733	-				-1.8
3,395,737	-				-1.4
3,395,737	-				-0.5
3,395,799	+				+1.4
3,395,913	+				-1.8
3,395,948	+	mltF	LU632_RS17980	0.11	-0.3
3,395,948	+	mltF	LU632_RS17980	0.11	+0.6
3,395,948	+	mltF	LU632_RS17980	0.11	+2.7
3,395,948	+	mltF	LU632_RS17980	0.11	+0.1
3,395,948	+	mltF	LU632_RS17980	0.11	+1.3
3,395,949	-	mltF	LU632_RS17980	0.11	+1.1
3,395,949	-	mltF	LU632_RS17980	0.11	-0.6
3,395,950	+	mltF	LU632_RS17980	0.11	-0.4
3,395,950	+	mltF	LU632_RS17980	0.11	-1.1
3,395,950	+	mltF	LU632_RS17980	0.11	-0.6
3,395,951	-	mltF	LU632_RS17980	0.11	-1.1
3,395,951	-	mltF	LU632_RS17980	0.11	-1.1
3,395,951	-	mltF	LU632_RS17980	0.11	-1.3
3,395,951	-	mltF	LU632_RS17980	0.11	-0.3
3,395,951	-	mltF	LU632_RS17980	0.11	+0.5
3,395,951	-	mltF	LU632_RS17980	0.11	+3.6
3,396,011	+	mltF	LU632_RS17980	0.16	+0.5
3,396,012	-	mltF	LU632_RS17980	0.16	-1.0
3,396,155	+	mltF	LU632_RS17980	0.25	+0.1
3,396,158	+	mltF	LU632_RS17980	0.26	-1.5
3,396,159	-	mltF	LU632_RS17980	0.26	+0.0
3,396,235	+	mltF	LU632_RS17980	0.31	-1.4
3,396,257	+	mltF	LU632_RS17980	0.32	-1.8
3,396,326	-	mltF	LU632_RS17980	0.37	+1.5
3,396,375	-	mltF	LU632_RS17980	0.41	-1.6
3,396,473	+	mltF	LU632_RS17980	0.47	-0.9
3,396,473	+	mltF	LU632_RS17980	0.47	+1.5
3,396,473	+	mltF	LU632_RS17980	0.47	+0.3
3,396,475	+	mltF	LU632_RS17980	0.47	-1.9
3,396,475	+	mltF	LU632_RS17980	0.47	+3.1
3,396,476	-	mltF	LU632_RS17980	0.47	+0.7
3,396,476	-	mltF	LU632_RS17980	0.47	+0.8
3,396,476	-	mltF	LU632_RS17980	0.47	+0.4
3,396,476	-	mltF	LU632_RS17980	0.47	-1.3
3,396,476	-	mltF	LU632_RS17980	0.47	-1.6
3,396,476	-	mltF	LU632_RS17980	0.47	+0.1
3,396,532	+	mltF	LU632_RS17980	0.51	-2.5
3,396,532	+	mltF	LU632_RS17980	0.51	-1.3
3,396,532	+	mltF	LU632_RS17980	0.51	+0.4
3,396,533	-	mltF	LU632_RS17980	0.51	+0.5
3,396,535	+	mltF	LU632_RS17980	0.51	-0.3
3,396,602	+	mltF	LU632_RS17980	0.56	+0.8
3,396,617	-	mltF	LU632_RS17980	0.57	+0.3
3,396,640	+	mltF	LU632_RS17980	0.59	-0.9
3,396,674	+	mltF	LU632_RS17980	0.61	+1.6
3,396,838	+	mltF	LU632_RS17980	0.72	-0.8
3,396,839	-	mltF	LU632_RS17980	0.72	-1.6
3,396,895	-	mltF	LU632_RS17980	0.76	-1.5
3,396,933	-	mltF	LU632_RS17980	0.79	+0.1
3,396,933	-	mltF	LU632_RS17980	0.79	-0.9
3,396,934	+	mltF	LU632_RS17980	0.79	+0.7
3,396,934	+	mltF	LU632_RS17980	0.79	-0.9
3,396,937	+	mltF	LU632_RS17980	0.79	-0.1
3,396,938	-	mltF	LU632_RS17980	0.79	-0.9
3,396,944	+	mltF	LU632_RS17980	0.79	+1.7
3,396,944	+	mltF	LU632_RS17980	0.79	+0.3
3,396,945	-	mltF	LU632_RS17980	0.80	+0.2
3,396,953	-	mltF	LU632_RS17980	0.80	-0.3
3,397,016	-	mltF	LU632_RS17980	0.84	+1.1
3,397,052	+	mltF	LU632_RS17980	0.87	-0.5
3,397,053	-	mltF	LU632_RS17980	0.87	+1.0
3,397,068	-	mltF	LU632_RS17980	0.88	-0.5
3,397,094	+	mltF	LU632_RS17980	0.90	-1.1
3,397,100	-				-1.1
3,397,101	-				+0.7
3,397,101	-				-0.4
3,397,101	-				-1.3
3,397,117	+				+0.1
3,397,121	+				-1.8
3,397,122	-				-1.4
3,397,122	-				+0.1
3,397,238	-				-1.3
3,397,255	+				-0.6
3,397,256	-				-2.1
3,397,256	-				-1.3
3,397,796	+				-2.0
3,397,797	-				+1.1
3,397,897	-	yfhb	LU632_RS17990	0.14	+0.4
3,397,914	-	yfhb	LU632_RS17990	0.16	-0.2
3,398,036	-	yfhb	LU632_RS17990	0.35	+2.5
3,398,052	+	yfhb	LU632_RS17990	0.37	+0.8
3,398,052	+	yfhb	LU632_RS17990	0.37	+2.4
3,398,145	-	yfhb	LU632_RS17990	0.51	+2.1