Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17270

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,243,630	+				-0.8
3,243,740	-		LU632_RS17260	0.33	-0.0
3,243,741	+		LU632_RS17260	0.34	+1.9
3,243,742	-		LU632_RS17260	0.35	-0.7
3,243,742	-		LU632_RS17260	0.35	+0.7
3,243,742	-		LU632_RS17260	0.35	-0.3
3,243,769	+		LU632_RS17260	0.51	+0.1
3,243,771	+		LU632_RS17260	0.52	-0.4
3,243,772	-		LU632_RS17260	0.53	-0.9
3,243,848	-				-1.9
3,243,848	-				-0.3
3,243,913	-		LU632_RS17265	0.33	-0.5
3,244,009	-		LU632_RS17265	0.89	+0.0
3,244,055	+				+1.7
3,244,055	+				-0.3
3,244,056	-				+0.2
3,244,122	+				+1.1
3,244,125	+				+0.4
3,244,126	-				-1.3
3,244,128	+				+0.6
3,244,128	+				+2.6
3,244,129	-				+0.8
3,244,154	+				-0.6
3,244,154	+				-0.9
3,244,155	-				-0.3
3,244,155	-				+2.0
3,244,156	+				-0.2
3,244,157	-				-0.2
3,244,157	-				+1.3
3,244,282	+				+0.3
3,244,283	-				+1.3
3,244,283	-				+0.1
3,244,283	-				-1.1
3,244,286	+				+0.9
3,244,286	+				+0.7
3,244,287	-				+0.5
3,244,287	-				-0.7
3,244,287	-				-0.2
3,244,287	-				-0.5
3,244,287	-				-0.6
3,244,339	-				+2.2
3,244,339	-				+2.0
3,244,469	-		LU632_RS17270	0.13	-1.2
3,244,597	+		LU632_RS17270	0.24	-1.7
3,244,739	-		LU632_RS17270	0.37	-0.7
3,244,739	-		LU632_RS17270	0.37	+0.3
3,244,741	-		LU632_RS17270	0.37	-2.0
3,244,765	+		LU632_RS17270	0.39	+1.3
3,244,804	-		LU632_RS17270	0.42	+1.4
3,244,995	+		LU632_RS17270	0.59	+0.4
3,245,001	+		LU632_RS17270	0.60	-1.9
3,245,080	-		LU632_RS17270	0.67	+1.7
3,245,080	-		LU632_RS17270	0.67	-0.6
3,245,385	+				+0.7
3,245,385	+				-0.7
3,245,386	-				+2.0
3,245,440	+				-0.0
3,245,440	+				+2.1
3,245,440	+				-1.5
3,245,441	-				+0.2
3,245,449	+				-1.9
3,245,449	+				-0.5
3,245,449	+				-0.6
3,245,449	+				+0.8
3,245,450	-				-1.2
3,245,450	-				+1.4
3,245,450	-				-1.0
3,245,547	+				+0.1
3,245,547	+				-1.1
3,245,548	-				+1.1
3,245,548	-				-0.9
3,245,569	-	fghA	LU632_RS17275	0.12	-2.0
3,245,700	-	fghA	LU632_RS17275	0.28	-1.1
3,245,751	+	fghA	LU632_RS17275	0.34	+1.3
3,245,752	-	fghA	LU632_RS17275	0.34	-0.6
3,245,752	-	fghA	LU632_RS17275	0.34	-0.1
3,245,755	+	fghA	LU632_RS17275	0.35	-1.5
3,245,756	-	fghA	LU632_RS17275	0.35	+0.1
3,245,782	+	fghA	LU632_RS17275	0.38	+0.6
3,245,788	-	fghA	LU632_RS17275	0.38	-1.8
3,245,827	+	fghA	LU632_RS17275	0.43	-0.1
3,245,827	+	fghA	LU632_RS17275	0.43	-2.5
3,245,827	+	fghA	LU632_RS17275	0.43	+0.8
3,245,827	+	fghA	LU632_RS17275	0.43	+4.0
3,245,827	+	fghA	LU632_RS17275	0.43	+1.4
3,245,827	+	fghA	LU632_RS17275	0.43	+1.4
3,245,827	+	fghA	LU632_RS17275	0.43	+0.1
3,245,827	+	fghA	LU632_RS17275	0.43	+1.9
3,245,828	-	fghA	LU632_RS17275	0.43	+0.8
3,245,828	-	fghA	LU632_RS17275	0.43	+2.2
3,245,828	-	fghA	LU632_RS17275	0.43	-1.4
3,245,828	-	fghA	LU632_RS17275	0.43	+0.6
3,245,828	-	fghA	LU632_RS17275	0.43	+0.1
3,245,828	-	fghA	LU632_RS17275	0.43	-0.9
3,245,828	-	fghA	LU632_RS17275	0.43	-1.2
3,245,828	-	fghA	LU632_RS17275	0.43	-2.4
3,245,828	-	fghA	LU632_RS17275	0.43	+1.4
3,245,834	-	fghA	LU632_RS17275	0.44	+1.7
3,246,005	+	fghA	LU632_RS17275	0.64	+0.3
3,246,035	-	fghA	LU632_RS17275	0.68	+1.0
3,246,068	-	fghA	LU632_RS17275	0.72	+1.7
3,246,113	+	fghA	LU632_RS17275	0.77	+0.2
3,246,117	+	fghA	LU632_RS17275	0.77	-1.7
3,246,117	+	fghA	LU632_RS17275	0.77	-1.1
3,246,118	-	fghA	LU632_RS17275	0.78	+0.3
3,246,212	+	fghA	LU632_RS17275	0.89	-2.0
3,246,213	-	fghA	LU632_RS17275	0.89	-0.3
3,246,213	-	fghA	LU632_RS17275	0.89	+2.7
3,246,213	-	fghA	LU632_RS17275	0.89	+0.2
3,246,213	-	fghA	LU632_RS17275	0.89	+1.3
3,246,242	-				+0.1
3,246,435	-		LU632_RS17280	0.11	+2.3