Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16935

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,190,913	-				+0.3
3,191,693	-				-0.9
3,191,743	+				-1.2
3,191,750	-				+0.7
3,191,826	+				-1.0
3,191,904	-				-0.4
3,191,916	+				-0.8
3,191,916	+				-0.3
3,192,004	-				-2.1
3,192,072	+				+0.0
3,192,073	-				-1.3
3,192,073	-				-0.9
3,192,073	-				-0.8
3,192,084	+				-0.8
3,192,094	-				+0.0
3,192,094	-				+0.6
3,192,096	-				+0.3
3,192,118	-				+1.9
3,192,166	-	clpB	LU632_RS16935	0.10	-0.4
3,192,196	+	clpB	LU632_RS16935	0.11	+2.4
3,192,196	+	clpB	LU632_RS16935	0.11	-0.8
3,192,197	-	clpB	LU632_RS16935	0.11	-0.9
3,192,281	-	clpB	LU632_RS16935	0.15	-2.8
3,192,321	+	clpB	LU632_RS16935	0.16	+3.5
3,192,330	+	clpB	LU632_RS16935	0.17	-1.1
3,192,330	+	clpB	LU632_RS16935	0.17	+0.3
3,192,494	+	clpB	LU632_RS16935	0.23	-1.3
3,192,516	+	clpB	LU632_RS16935	0.24	+2.1
3,192,517	-	clpB	LU632_RS16935	0.24	+0.5
3,192,535	+	clpB	LU632_RS16935	0.24	-1.4
3,192,535	+	clpB	LU632_RS16935	0.24	-0.2
3,192,536	-	clpB	LU632_RS16935	0.25	+2.5
3,192,536	-	clpB	LU632_RS16935	0.25	+0.4
3,192,577	-	clpB	LU632_RS16935	0.26	-0.7
3,192,587	-	clpB	LU632_RS16935	0.26	-1.4
3,192,587	-	clpB	LU632_RS16935	0.26	-1.4
3,192,631	-	clpB	LU632_RS16935	0.28	-0.6
3,192,634	+	clpB	LU632_RS16935	0.28	+3.0
3,192,634	+	clpB	LU632_RS16935	0.28	+1.4
3,192,635	-	clpB	LU632_RS16935	0.28	-0.1
3,192,635	-	clpB	LU632_RS16935	0.28	-0.1
3,192,778	+	clpB	LU632_RS16935	0.34	-0.2
3,192,779	-	clpB	LU632_RS16935	0.34	-0.3
3,192,859	+	clpB	LU632_RS16935	0.37	+0.9
3,192,860	-	clpB	LU632_RS16935	0.37	+0.1
3,192,892	-	clpB	LU632_RS16935	0.38	-0.1
3,193,149	+	clpB	LU632_RS16935	0.48	-0.1
3,193,269	+	clpB	LU632_RS16935	0.53	-0.1
3,193,269	+	clpB	LU632_RS16935	0.53	-1.7
3,193,270	-	clpB	LU632_RS16935	0.53	-0.3
3,193,303	+	clpB	LU632_RS16935	0.54	-0.8
3,193,305	+	clpB	LU632_RS16935	0.54	+0.6
3,193,306	-	clpB	LU632_RS16935	0.54	+0.5
3,193,338	-	clpB	LU632_RS16935	0.56	-0.0
3,193,338	-	clpB	LU632_RS16935	0.56	+0.6
3,193,426	+	clpB	LU632_RS16935	0.59	-2.6
3,193,426	+	clpB	LU632_RS16935	0.59	-1.0
3,193,426	+	clpB	LU632_RS16935	0.59	-1.2
3,193,511	+	clpB	LU632_RS16935	0.62	-1.0
3,193,512	-	clpB	LU632_RS16935	0.62	-0.4
3,193,533	+	clpB	LU632_RS16935	0.63	+0.7
3,193,552	+	clpB	LU632_RS16935	0.64	-0.7
3,193,552	+	clpB	LU632_RS16935	0.64	+0.0
3,193,552	+	clpB	LU632_RS16935	0.64	-0.1
3,193,553	-	clpB	LU632_RS16935	0.64	-0.6
3,193,579	-	clpB	LU632_RS16935	0.65	-1.2
3,193,584	+	clpB	LU632_RS16935	0.65	+0.3
3,193,584	+	clpB	LU632_RS16935	0.65	+1.0
3,193,584	+	clpB	LU632_RS16935	0.65	-1.1
3,193,632	+	clpB	LU632_RS16935	0.67	+1.3
3,193,656	+	clpB	LU632_RS16935	0.68	-1.5
3,193,657	-	clpB	LU632_RS16935	0.68	-0.9
3,193,725	-	clpB	LU632_RS16935	0.70	-0.3
3,193,728	+	clpB	LU632_RS16935	0.71	+0.0
3,193,728	+	clpB	LU632_RS16935	0.71	+0.2
3,193,729	-	clpB	LU632_RS16935	0.71	+2.2
3,193,807	-	clpB	LU632_RS16935	0.74	-3.1
3,193,864	-	clpB	LU632_RS16935	0.76	-0.1
3,193,915	+	clpB	LU632_RS16935	0.78	-0.8
3,193,985	+	clpB	LU632_RS16935	0.81	-0.8
3,194,197	+	clpB	LU632_RS16935	0.89	-0.8
3,194,198	-	clpB	LU632_RS16935	0.89	+0.7
3,194,198	-	clpB	LU632_RS16935	0.89	-0.7
3,194,203	-	clpB	LU632_RS16935	0.89	-1.4
3,194,233	+				-1.2
3,194,234	-				+1.6
3,194,234	-				-0.5
3,194,234	-				+1.9
3,194,234	-				-0.3
3,194,234	-				+0.6
3,194,289	+				+0.0
3,194,325	+				-1.2
3,194,325	+				+0.8
3,194,325	+				-0.3
3,194,329	+				+1.5
3,194,329	+				-1.7
3,194,330	-				+1.6
3,194,330	-				-2.7
3,194,373	+				+0.7
3,194,374	-				+0.2
3,194,374	-				-0.2
3,194,374	-				-0.1
3,194,457	+				-0.2
3,194,457	+				-1.0
3,194,457	+				-0.3
3,194,476	-				-0.4
3,194,543	-				-1.0
3,194,602	+				-0.4
3,194,603	-				-0.4
3,194,605	-				+0.5
3,194,762	-	pgeF	LU632_RS16940	0.22	-0.4
3,194,762	-	pgeF	LU632_RS16940	0.22	-0.2
3,194,764	+	pgeF	LU632_RS16940	0.22	+0.1
3,194,764	+	pgeF	LU632_RS16940	0.22	-0.6
3,194,764	+	pgeF	LU632_RS16940	0.22	+0.8
3,194,765	-	pgeF	LU632_RS16940	0.22	+0.6
3,194,765	-	pgeF	LU632_RS16940	0.22	-0.6
3,194,765	-	pgeF	LU632_RS16940	0.22	-2.5
3,194,864	+	pgeF	LU632_RS16940	0.36	-0.3
3,194,886	+	pgeF	LU632_RS16940	0.39	+1.6
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.2
3,194,886	+	pgeF	LU632_RS16940	0.39	+0.2
3,194,887	-	pgeF	LU632_RS16940	0.39	-0.4
3,194,887	-	pgeF	LU632_RS16940	0.39	+1.0
3,194,887	-	pgeF	LU632_RS16940	0.39	-0.3
3,194,888	+	pgeF	LU632_RS16940	0.39	-0.1
3,194,889	-	pgeF	LU632_RS16940	0.40	+0.3
3,195,000	+	pgeF	LU632_RS16940	0.55	+3.1
3,195,000	+	pgeF	LU632_RS16940	0.55	+0.2
3,195,001	-	pgeF	LU632_RS16940	0.55	+0.6
3,195,028	-	pgeF	LU632_RS16940	0.59	+0.8
3,195,056	+	pgeF	LU632_RS16940	0.62	+0.6
3,195,058	+	pgeF	LU632_RS16940	0.63	+1.6
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.0
3,195,058	+	pgeF	LU632_RS16940	0.63	+0.7
3,195,059	-	pgeF	LU632_RS16940	0.63	+1.8
3,195,108	+	pgeF	LU632_RS16940	0.70	+0.7
3,195,109	-	pgeF	LU632_RS16940	0.70	+0.1
3,195,109	-	pgeF	LU632_RS16940	0.70	-0.6
3,195,153	+	pgeF	LU632_RS16940	0.76	-0.2
3,195,175	+	pgeF	LU632_RS16940	0.79	-1.6
3,195,175	+	pgeF	LU632_RS16940	0.79	+0.3
3,195,176	-	pgeF	LU632_RS16940	0.79	-0.1
3,195,176	-	pgeF	LU632_RS16940	0.79	+0.5
3,195,231	+	pgeF	LU632_RS16940	0.86	+0.4
3,195,289	-				+1.1
3,195,349	+				+0.5
3,195,362	-				+0.5
3,195,439	+	rluD	LU632_RS16945	0.11	+2.0
3,195,447	+	rluD	LU632_RS16945	0.12	+0.0
3,195,448	-	rluD	LU632_RS16945	0.12	-2.5
3,195,448	-	rluD	LU632_RS16945	0.12	-0.2
3,195,448	-	rluD	LU632_RS16945	0.12	+0.6
3,195,449	+	rluD	LU632_RS16945	0.12	+0.6
3,195,450	-	rluD	LU632_RS16945	0.12	-1.1
3,195,450	-	rluD	LU632_RS16945	0.12	+0.0