Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16010

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
3,024,831	+				-0.8
3,024,840	+				+0.9
3,024,849	+				-0.4
3,024,856	+				+0.1
3,024,857	-				+0.1
3,024,857	-				+1.6
3,024,907	+				-3.8
3,024,949	+				+0.7
3,025,002	-				+1.4
3,025,026	+		LU632_RS16005	0.13	+1.0
3,025,031	-		LU632_RS16005	0.14	+3.2
3,025,033	+		LU632_RS16005	0.14	-1.0
3,025,034	-		LU632_RS16005	0.15	+0.5
3,025,037	+		LU632_RS16005	0.15	-0.7
3,025,038	-		LU632_RS16005	0.15	-0.6
3,025,038	-		LU632_RS16005	0.15	-1.3
3,025,038	-		LU632_RS16005	0.15	-2.1
3,025,038	-		LU632_RS16005	0.15	-0.2
3,025,038	-		LU632_RS16005	0.15	-0.5
3,025,053	+		LU632_RS16005	0.18	+0.3
3,025,053	+		LU632_RS16005	0.18	-1.4
3,025,102	-		LU632_RS16005	0.28	-0.0
3,025,105	+		LU632_RS16005	0.29	+1.2
3,025,105	+		LU632_RS16005	0.29	+0.5
3,025,106	-		LU632_RS16005	0.29	-0.4
3,025,124	-		LU632_RS16005	0.33	-1.2
3,025,189	+		LU632_RS16005	0.46	-0.4
3,025,197	+		LU632_RS16005	0.47	+1.2
3,025,197	+		LU632_RS16005	0.47	-0.2
3,025,204	+		LU632_RS16005	0.49	+1.5
3,025,224	+		LU632_RS16005	0.53	-0.4
3,025,416	+				+1.7
3,025,416	+				-0.7
3,025,417	-				+1.5
3,025,417	-				+1.4
3,025,465	+				-0.7
3,025,465	+				+0.5
3,025,466	-				+1.0
3,025,466	-				-1.6
3,025,466	-				+0.8
3,025,598	-				-0.2
3,025,616	+				+2.9
3,025,616	+				+0.6
3,025,620	+				+4.4
3,025,620	+				+0.4
3,025,620	+				-0.3
3,025,620	+				-0.4
3,025,621	-				-1.2
3,025,621	-				+0.3
3,025,621	-				+1.7
3,025,665	+				-0.1
3,025,666	-				-1.4
3,025,666	-				+1.9
3,025,763	-		LU632_RS16010	0.15	-1.4
3,025,774	+		LU632_RS16010	0.15	-0.9
3,025,789	-		LU632_RS16010	0.17	-2.0
3,025,854	+		LU632_RS16010	0.21	-0.5
3,025,854	+		LU632_RS16010	0.21	-0.5
3,025,855	-		LU632_RS16010	0.21	+0.9
3,025,855	-		LU632_RS16010	0.21	+0.3
3,025,855	-		LU632_RS16010	0.21	+0.9
3,025,860	+		LU632_RS16010	0.22	+1.9
3,026,003	+		LU632_RS16010	0.33	-0.4
3,026,004	-		LU632_RS16010	0.33	-1.5
3,026,078	-		LU632_RS16010	0.38	+1.0
3,026,079	+		LU632_RS16010	0.38	-1.0
3,026,079	+		LU632_RS16010	0.38	-2.0
3,026,080	-		LU632_RS16010	0.38	-1.6
3,026,230	-		LU632_RS16010	0.50	+0.8
3,026,230	-		LU632_RS16010	0.50	+1.0
3,026,262	-		LU632_RS16010	0.52	-0.3
3,026,420	+		LU632_RS16010	0.64	-0.8
3,026,437	-		LU632_RS16010	0.65	+0.3
3,026,516	+		LU632_RS16010	0.71	+0.6
3,026,517	-		LU632_RS16010	0.71	+2.2
3,026,594	+		LU632_RS16010	0.77	+3.2
3,026,594	+		LU632_RS16010	0.77	-0.4
3,026,595	-		LU632_RS16010	0.77	+2.2
3,026,595	-		LU632_RS16010	0.77	+0.0
3,026,728	+		LU632_RS16010	0.87	+2.6
3,026,729	-		LU632_RS16010	0.87	-2.0
3,026,729	-		LU632_RS16010	0.87	+0.6
3,026,852	-				+0.9
3,026,852	-				-0.3
3,026,953	-				-0.9
3,026,953	-				-1.1
3,026,953	-				-0.0
3,027,055	+				-1.0
3,027,055	+				-0.4
3,027,152	+				-1.6
3,027,198	+				-0.4
3,027,199	-				+0.1
3,027,200	+				-1.6
3,027,200	+				-0.6
3,027,200	+				+0.2
3,027,201	-				-0.4
3,027,281	-				-0.1
3,027,315	+				+0.3
3,027,316	-				+2.8
3,027,359	-				-3.1
3,027,375	-				+2.3
3,027,445	-	cpoB	LU632_RS16020	0.17	+1.0
3,027,534	+	cpoB	LU632_RS16020	0.28	+2.0
3,027,588	+	cpoB	LU632_RS16020	0.35	-0.7
3,027,617	+	cpoB	LU632_RS16020	0.39	-0.3
3,027,617	+	cpoB	LU632_RS16020	0.39	-1.0
3,027,618	-	cpoB	LU632_RS16020	0.39	-1.8
3,027,618	-	cpoB	LU632_RS16020	0.39	-2.6
3,027,619	+	cpoB	LU632_RS16020	0.39	+0.4
3,027,669	+	cpoB	LU632_RS16020	0.46	-1.5
3,027,670	-	cpoB	LU632_RS16020	0.46	-1.6
3,027,670	-	cpoB	LU632_RS16020	0.46	-0.5
3,027,670	-	cpoB	LU632_RS16020	0.46	+1.2
3,027,712	+	cpoB	LU632_RS16020	0.51	+0.6
3,027,831	-	cpoB	LU632_RS16020	0.67	-1.7
3,027,846	+	cpoB	LU632_RS16020	0.68	+0.2
3,027,881	+	cpoB	LU632_RS16020	0.73	-0.0
3,027,881	+	cpoB	LU632_RS16020	0.73	+0.3
3,027,882	-	cpoB	LU632_RS16020	0.73	-0.0
3,027,882	-	cpoB	LU632_RS16020	0.73	+0.3
3,027,882	-	cpoB	LU632_RS16020	0.73	-1.2
3,027,882	-	cpoB	LU632_RS16020	0.73	-0.4
3,027,884	-	cpoB	LU632_RS16020	0.73	-0.7