Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15315

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,900,670	-				+0.1
2,900,697	-				-1.5
2,900,699	+				+1.3
2,900,779	+				+1.2
2,900,906	-				-0.0
2,900,943	+	ybaK	LU632_RS15310	0.11	+0.8
2,900,943	+	ybaK	LU632_RS15310	0.11	+0.3
2,900,944	-	ybaK	LU632_RS15310	0.11	+0.4
2,900,945	+	ybaK	LU632_RS15310	0.11	+0.6
2,900,945	+	ybaK	LU632_RS15310	0.11	-2.6
2,900,945	+	ybaK	LU632_RS15310	0.11	+0.3
2,900,945	+	ybaK	LU632_RS15310	0.11	+1.9
2,900,946	-	ybaK	LU632_RS15310	0.11	-0.7
2,900,946	-	ybaK	LU632_RS15310	0.11	+0.5
2,900,946	-	ybaK	LU632_RS15310	0.11	-1.2
2,900,946	-	ybaK	LU632_RS15310	0.11	-1.0
2,900,949	+	ybaK	LU632_RS15310	0.12	-0.3
2,900,950	-	ybaK	LU632_RS15310	0.12	+0.1
2,900,950	-	ybaK	LU632_RS15310	0.12	-1.3
2,901,024	+	ybaK	LU632_RS15310	0.28	+0.0
2,901,024	+	ybaK	LU632_RS15310	0.28	-0.6
2,901,026	+	ybaK	LU632_RS15310	0.28	+0.8
2,901,038	-	ybaK	LU632_RS15310	0.30	-0.4
2,901,101	-	ybaK	LU632_RS15310	0.44	+2.6
2,901,108	-	ybaK	LU632_RS15310	0.45	-0.0
2,901,199	+	ybaK	LU632_RS15310	0.64	-0.0
2,901,302	-	ybaK	LU632_RS15310	0.85	-1.2
2,901,355	+				-2.3
2,901,464	+				+1.2
2,901,502	-				-0.0
2,901,511	+				-0.4
2,901,518	+				-0.4
2,901,519	-				+1.2
2,901,557	-				-1.2
2,901,582	-				-0.5
2,901,674	+				-1.4
2,901,674	+				+0.6
2,901,782	+		LU632_RS15315	0.13	-0.4
2,901,917	-		LU632_RS15315	0.24	+0.2
2,901,954	-		LU632_RS15315	0.28	+1.1
2,901,956	-		LU632_RS15315	0.28	-1.0
2,901,956	-		LU632_RS15315	0.28	+0.8
2,902,002	+		LU632_RS15315	0.32	-0.4
2,902,002	+		LU632_RS15315	0.32	+1.6
2,902,006	-		LU632_RS15315	0.32	-1.6
2,902,059	-		LU632_RS15315	0.37	-1.5
2,902,059	-		LU632_RS15315	0.37	+0.2
2,902,059	-		LU632_RS15315	0.37	-0.6
2,902,172	+		LU632_RS15315	0.47	+0.1
2,902,199	+		LU632_RS15315	0.49	-0.8
2,902,264	+		LU632_RS15315	0.55	-0.2
2,902,264	+		LU632_RS15315	0.55	+2.2
2,902,264	+		LU632_RS15315	0.55	+3.4
2,902,264	+		LU632_RS15315	0.55	-0.7
2,902,264	+		LU632_RS15315	0.55	+0.2
2,902,264	+		LU632_RS15315	0.55	-0.8
2,902,265	-		LU632_RS15315	0.55	-1.9
2,902,265	-		LU632_RS15315	0.55	-1.6
2,902,265	-		LU632_RS15315	0.55	-0.6
2,902,265	-		LU632_RS15315	0.55	-1.8
2,902,265	-		LU632_RS15315	0.55	-0.6
2,902,265	-		LU632_RS15315	0.55	-0.8
2,902,266	+		LU632_RS15315	0.55	+1.0
2,902,266	+		LU632_RS15315	0.55	+1.2
2,902,266	+		LU632_RS15315	0.55	+1.1
2,902,267	-		LU632_RS15315	0.55	+3.2
2,902,290	-		LU632_RS15315	0.57	+0.5
2,902,291	+		LU632_RS15315	0.57	-0.3
2,902,292	-		LU632_RS15315	0.57	-0.6
2,902,450	+		LU632_RS15315	0.71	-0.2
2,902,452	+		LU632_RS15315	0.71	-1.0
2,902,453	-		LU632_RS15315	0.71	+1.7
2,902,531	-		LU632_RS15315	0.78	-2.2
2,902,533	+		LU632_RS15315	0.78	-0.4
2,902,630	+		LU632_RS15315	0.87	-0.3
2,902,631	-		LU632_RS15315	0.87	-0.8
2,902,631	-		LU632_RS15315	0.87	-0.2
2,902,631	-		LU632_RS15315	0.87	-0.0
2,902,632	+		LU632_RS15315	0.87	-0.6
2,902,633	-		LU632_RS15315	0.87	+0.2
2,902,642	+		LU632_RS15315	0.88	-0.6
2,902,645	+		LU632_RS15315	0.88	-0.7
2,902,646	-		LU632_RS15315	0.88	+0.3
2,902,669	+				-1.6
2,902,669	+				+1.2
2,902,671	+				-1.4
2,902,671	+				-0.8
2,902,672	-				-2.2
2,902,765	-				+0.2
2,902,794	+				-1.8
2,902,819	+				-1.9
2,903,581	+		LU632_RS15320	0.69	+0.3
2,903,583	+		LU632_RS15320	0.69	-0.4
2,903,683	+		LU632_RS15320	0.79	-1.2
2,903,754	+		LU632_RS15320	0.86	+0.9
2,903,754	+		LU632_RS15320	0.86	+0.7
2,903,755	-		LU632_RS15320	0.86	+0.5
2,903,769	-		LU632_RS15320	0.87	-0.4
2,903,772	+		LU632_RS15320	0.88	-1.9
2,903,772	+		LU632_RS15320	0.88	-0.4
2,903,772	+		LU632_RS15320	0.88	+0.5
2,903,772	+		LU632_RS15320	0.88	+0.9
2,903,773	-		LU632_RS15320	0.88	+0.2
2,903,773	-		LU632_RS15320	0.88	-0.8
2,903,774	+		LU632_RS15320	0.88	-0.8
2,903,775	-		LU632_RS15320	0.88	-0.0