Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14995

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,849,726	+				-2.4
2,849,831	-		LU632_RS14990	0.12	-1.1
2,849,866	-		LU632_RS14990	0.17	+0.3
2,849,889	+		LU632_RS14990	0.20	-0.2
2,849,889	+		LU632_RS14990	0.20	+0.5
2,849,889	+		LU632_RS14990	0.20	+1.3
2,849,890	-		LU632_RS14990	0.20	+1.8
2,849,967	+		LU632_RS14990	0.30	+0.8
2,849,967	+		LU632_RS14990	0.30	-1.8
2,849,967	+		LU632_RS14990	0.30	-0.3
2,849,968	-		LU632_RS14990	0.30	-0.5
2,849,968	-		LU632_RS14990	0.30	-0.3
2,849,968	-		LU632_RS14990	0.30	+1.3
2,850,207	+		LU632_RS14990	0.60	+4.5
2,850,207	+		LU632_RS14990	0.60	-1.0
2,850,237	+		LU632_RS14990	0.64	+1.0
2,850,308	-		LU632_RS14990	0.72	+1.0
2,850,544	+				+0.7
2,850,660	+		LU632_RS14995	0.31	-1.6
2,850,688	-		LU632_RS14995	0.38	+0.5
2,850,691	+		LU632_RS14995	0.39	-0.1
2,850,692	-		LU632_RS14995	0.39	-1.8
2,850,804	+		LU632_RS14995	0.65	+0.5
2,850,825	+		LU632_RS14995	0.69	+1.9
2,850,895	+		LU632_RS14995	0.86	-0.3
2,850,895	+		LU632_RS14995	0.86	-0.1
2,850,895	+		LU632_RS14995	0.86	-0.3
2,850,895	+		LU632_RS14995	0.86	+1.9
2,850,895	+		LU632_RS14995	0.86	+0.4
2,850,895	+		LU632_RS14995	0.86	+0.6
2,850,895	+		LU632_RS14995	0.86	-1.1
2,850,895	+		LU632_RS14995	0.86	-0.6
2,850,895	+		LU632_RS14995	0.86	+0.7
2,850,895	+		LU632_RS14995	0.86	-0.3
2,850,895	+		LU632_RS14995	0.86	+0.7
2,850,895	+		LU632_RS14995	0.86	+1.8
2,850,895	+		LU632_RS14995	0.86	+0.0
2,850,896	-		LU632_RS14995	0.86	-1.4
2,850,896	-		LU632_RS14995	0.86	+1.9
2,850,896	-		LU632_RS14995	0.86	-0.5
2,850,896	-		LU632_RS14995	0.86	+0.7
2,850,896	-		LU632_RS14995	0.86	+0.5
2,850,896	-		LU632_RS14995	0.86	+0.8
2,850,916	+				-1.4
2,850,991	+				+0.7
2,850,992	-				+1.0
2,851,062	-				-0.0
2,851,097	-				+1.6
2,851,103	-				+0.4
2,851,103	-				+1.0
2,851,179	+				-1.1
2,851,179	+				+1.5
2,851,180	-				-1.6
2,851,299	+		LU632_RS15000	0.59	-1.5
2,851,325	+		LU632_RS15000	0.73	-0.9
2,851,326	-		LU632_RS15000	0.73	-0.9
2,851,364	+				-2.1
2,851,397	+				+2.2
2,851,556	-				-0.1
2,851,557	+				+1.7
2,851,557	+				+0.3
2,851,557	+				-0.2
2,851,557	+				+0.6
2,851,558	-				+0.4
2,851,558	-				-1.2
2,851,694	-				-0.5
2,851,709	+				+1.5
2,851,756	-				+1.2
2,851,761	+				-1.1
2,851,761	+				+0.4
2,851,761	+				+1.1
2,851,761	+				+0.0
2,851,797	-				+0.5
2,851,799	+				-0.1
2,851,799	+				-0.1
2,851,799	+				+0.0
2,851,800	-				+0.6
2,851,800	-				-1.8
2,851,810	+				-1.4
2,851,811	-				-0.1
2,851,950	-		LU632_RS15005	0.50	+3.2
2,851,950	-		LU632_RS15005	0.50	-1.9