Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14735

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,800,956	-				+1.3
2,800,992	+				+0.2
2,801,037	+				+2.0
2,801,100	-				-0.3
2,801,109	+				-0.7
2,801,235	-				-0.2
2,801,235	-				+0.3
2,801,248	+				+1.1
2,801,270	+				-0.4
2,801,272	+				-1.3
2,801,272	+				-0.9
2,801,274	+				+1.4
2,801,275	-				-0.1
2,801,280	+				-0.1
2,801,281	-				-1.0
2,801,282	+				-3.0
2,801,282	+				+0.1
2,801,283	-				+0.8
2,801,299	-				+0.8
2,801,322	-				+0.9
2,801,364	+				-0.6
2,801,365	-				+1.5
2,801,365	-				+0.2
2,801,454	-				-1.3
2,801,537	+				+1.0
2,801,709	+		LU632_RS14735	0.32	-3.2
2,801,710	-		LU632_RS14735	0.32	+1.9
2,801,711	+		LU632_RS14735	0.32	-2.7
2,801,711	+		LU632_RS14735	0.32	-0.1
2,801,712	-		LU632_RS14735	0.33	-2.9
2,801,712	-		LU632_RS14735	0.33	+0.4
2,801,715	+		LU632_RS14735	0.33	-3.2
2,801,934	+		LU632_RS14735	0.74	-2.5
2,802,003	+		LU632_RS14735	0.86	-1.5
2,802,004	-		LU632_RS14735	0.87	-2.1
2,802,037	+				-2.1
2,802,037	+				-1.8
2,802,121	+				-1.9
2,802,122	-				-0.3
2,802,122	-				-1.9
2,802,277	+				-0.8
2,802,277	+				+0.4
2,802,306	+				-0.1
2,802,306	+				+1.5
2,802,307	-				-0.7
2,802,307	-				-2.6
2,802,307	-				+0.8
2,802,307	-				-1.3
2,802,307	-				-0.4
2,802,323	+				-2.2
2,802,324	-				+0.2
2,802,324	-				-0.2
2,802,325	+				-1.5
2,802,325	+				-0.3
2,802,326	-				-1.2
2,802,326	-				-0.8
2,802,326	-				-2.5
2,802,373	+				+0.7
2,802,397	+				+0.9
2,802,399	+				+0.8
2,802,399	+				+1.9
2,802,400	-				+1.6
2,802,435	-				-0.6
2,802,459	+				+0.7
2,802,460	-				+0.5
2,802,472	+				+4.5
2,802,472	+				-1.2
2,802,472	+				-0.5
2,802,472	+				+0.3
2,802,473	-				+1.3
2,802,473	-				+0.7
2,802,473	-				+0.4
2,802,473	-				+1.4
2,802,473	-				+2.9
2,802,473	-				-0.7
2,802,473	-				+0.7
2,802,474	+				-0.2
2,802,474	+				+1.6
2,802,474	+				+0.7
2,802,474	+				-0.2
2,802,474	+				-0.0
2,802,475	-				-0.0
2,802,475	-				-0.5
2,802,475	-				-1.9
2,802,476	+				+0.1
2,802,476	+				+0.4
2,802,476	+				+0.8
2,802,476	+				-0.3
2,802,476	+				+0.7
2,802,476	+				-0.5
2,802,477	-				-0.2
2,802,492	+		LU632_RS14740	0.10	-2.7
2,802,569	-		LU632_RS14740	0.16	-0.6
2,802,588	+		LU632_RS14740	0.18	-1.5
2,802,589	-		LU632_RS14740	0.18	-0.3
2,802,591	-		LU632_RS14740	0.18	-0.1
2,802,596	+		LU632_RS14740	0.18	-2.4
2,802,634	-		LU632_RS14740	0.21	-0.8
2,802,729	+		LU632_RS14740	0.28	+1.5
2,802,734	+		LU632_RS14740	0.29	+0.5
2,802,734	+		LU632_RS14740	0.29	+1.1
2,802,734	+		LU632_RS14740	0.29	-0.6
2,802,735	-		LU632_RS14740	0.29	+1.2
2,802,735	-		LU632_RS14740	0.29	-2.2
2,802,735	-		LU632_RS14740	0.29	-0.9
2,802,735	-		LU632_RS14740	0.29	+1.0
2,802,735	-		LU632_RS14740	0.29	-0.3
2,802,789	+		LU632_RS14740	0.33	-0.3
2,802,790	-		LU632_RS14740	0.33	+0.4
2,802,796	-		LU632_RS14740	0.34	-2.3
2,802,853	+		LU632_RS14740	0.38	-0.8
2,802,874	-		LU632_RS14740	0.40	+0.6
2,802,892	-		LU632_RS14740	0.41	-1.3
2,802,924	+		LU632_RS14740	0.44	-1.2
2,802,984	+		LU632_RS14740	0.48	-0.4
2,802,985	-		LU632_RS14740	0.48	-0.7
2,803,070	+		LU632_RS14740	0.55	-3.1