Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14010

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,689,067	+				-2.0
2,689,068	-				-1.4
2,689,188	+				+0.5
2,689,216	+		LU632_RS14005	0.10	-0.4
2,689,223	+		LU632_RS14005	0.11	+0.1
2,689,223	+		LU632_RS14005	0.11	-0.6
2,689,223	+		LU632_RS14005	0.11	-0.2
2,689,224	-		LU632_RS14005	0.12	-2.0
2,689,327	-		LU632_RS14005	0.28	-0.7
2,689,327	-		LU632_RS14005	0.28	+1.4
2,689,327	-		LU632_RS14005	0.28	-2.1
2,689,405	-		LU632_RS14005	0.40	-0.7
2,689,405	-		LU632_RS14005	0.40	-0.4
2,689,514	-		LU632_RS14005	0.57	-1.7
2,689,615	-		LU632_RS14005	0.73	-0.1
2,689,615	-		LU632_RS14005	0.73	+0.3
2,689,618	+		LU632_RS14005	0.74	+0.6
2,689,682	+		LU632_RS14005	0.84	-1.5
2,689,714	+		LU632_RS14005	0.89	-2.7
2,689,715	-		LU632_RS14005	0.89	-0.5
2,689,786	+				+0.1
2,689,787	-				-1.1
2,690,050	-				-2.8
2,690,167	-	ldcA	LU632_RS14010	0.13	-2.0
2,690,167	-	ldcA	LU632_RS14010	0.13	-3.1
2,690,212	-	ldcA	LU632_RS14010	0.18	-2.6
2,690,241	+	ldcA	LU632_RS14010	0.21	+0.4
2,690,242	-	ldcA	LU632_RS14010	0.21	+0.4
2,690,242	-	ldcA	LU632_RS14010	0.21	-2.3
2,690,421	+	ldcA	LU632_RS14010	0.40	+0.1
2,690,422	-	ldcA	LU632_RS14010	0.40	-1.1
2,690,422	-	ldcA	LU632_RS14010	0.40	-0.1
2,690,523	+	ldcA	LU632_RS14010	0.51	-1.9
2,690,564	+	ldcA	LU632_RS14010	0.56	-0.6
2,690,745	+	ldcA	LU632_RS14010	0.75	-1.0
2,690,746	-	ldcA	LU632_RS14010	0.75	-0.1
2,690,961	+				-2.1
2,690,962	-				+0.1
2,691,053	-				-3.0
2,691,115	+				-0.7
2,691,119	+				-1.1
2,691,182	+				+1.0
2,691,183	-				-0.2
2,691,186	+				+1.6
2,691,248	-				-1.6
2,691,292	+				-0.9
2,691,292	+				-0.2
2,691,293	-				-2.0
2,691,296	+				+0.6
2,691,308	+		LU632_RS14015	0.26	+0.3
2,691,308	+		LU632_RS14015	0.26	-0.2
2,691,309	-		LU632_RS14015	0.27	-1.6
2,691,309	-		LU632_RS14015	0.27	+1.0
2,691,370	-				+1.4