Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12625

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,399,769	-		LU632_RS12615	0.48	+1.1
2,399,936	+		LU632_RS12615	0.63	-3.5
2,399,936	+		LU632_RS12615	0.63	-0.1
2,399,997	-		LU632_RS12615	0.68	-1.4
2,400,072	+		LU632_RS12615	0.74	+2.0
2,400,086	+		LU632_RS12615	0.76	+3.2
2,400,103	-		LU632_RS12615	0.77	-0.9
2,400,233	+		LU632_RS12615	0.88	-0.6
2,400,242	+		LU632_RS12615	0.89	+1.4
2,400,344	+				-0.0
2,400,345	-				+0.0
2,400,379	+				-0.1
2,400,379	+				-0.2
2,400,380	-				+0.2
2,400,380	-				-1.0
2,400,582	+		LU632_RS12620	0.73	-0.9
2,400,583	-		LU632_RS12620	0.74	+0.2
2,400,598	-		LU632_RS12620	0.78	-1.1
2,400,737	+				-0.0
2,400,738	-				+1.2
2,400,802	-				-0.7
2,400,876	+				+0.2
2,400,877	-				+0.5
2,400,942	+		LU632_RS12625	0.13	+0.8
2,400,943	-		LU632_RS12625	0.13	-0.0
2,400,943	-		LU632_RS12625	0.13	+0.3
2,400,943	-		LU632_RS12625	0.13	-0.6
2,400,970	-		LU632_RS12625	0.15	-0.3
2,401,006	+		LU632_RS12625	0.17	+1.0
2,401,174	-		LU632_RS12625	0.28	-2.5
2,401,175	-		LU632_RS12625	0.28	+0.3
2,401,177	-		LU632_RS12625	0.28	-1.0
2,401,179	+		LU632_RS12625	0.28	+0.3
2,401,206	+		LU632_RS12625	0.30	+0.1
2,401,212	+		LU632_RS12625	0.31	-2.1
2,401,245	+		LU632_RS12625	0.33	-1.6
2,401,350	+		LU632_RS12625	0.39	-2.1
2,401,351	-		LU632_RS12625	0.39	-0.3
2,401,400	-		LU632_RS12625	0.43	-0.9
2,401,530	+		LU632_RS12625	0.51	+2.1
2,401,838	+		LU632_RS12625	0.71	+0.2
2,401,857	+		LU632_RS12625	0.72	+0.8
2,401,947	+		LU632_RS12625	0.78	-0.6
2,401,947	+		LU632_RS12625	0.78	-0.1
2,401,948	-		LU632_RS12625	0.78	-1.4
2,402,028	+		LU632_RS12625	0.83	-0.2
2,402,059	-		LU632_RS12625	0.85	-1.7
2,402,322	+				-1.7
2,402,324	+				+1.2
2,402,329	-				-0.0
2,402,370	-				-0.4
2,402,374	-				+1.2
2,402,399	+				-0.2
2,402,541	-				+0.2
2,402,683	+				+0.4
2,402,715	+				-1.4
2,402,716	-				-0.8
2,402,759	+				+2.7
2,402,771	+				+1.0
2,402,797	-				+1.2
2,402,882	+				-0.1
2,402,912	+				+0.4
2,402,982	-				+0.8
2,403,008	+	hrpA	LU632_RS12630	0.10	-2.1
2,403,009	-	hrpA	LU632_RS12630	0.10	+0.7
2,403,009	-	hrpA	LU632_RS12630	0.10	-0.6
2,403,018	+	hrpA	LU632_RS12630	0.11	-0.1
2,403,030	+	hrpA	LU632_RS12630	0.11	+2.0
2,403,051	+	hrpA	LU632_RS12630	0.11	-1.7
2,403,052	-	hrpA	LU632_RS12630	0.11	+1.3
2,403,052	-	hrpA	LU632_RS12630	0.11	+0.5
2,403,052	-	hrpA	LU632_RS12630	0.11	+0.9