Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12500

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,373,799	+				+1.4
2,373,834	-				-0.3
2,373,867	-				+1.7
2,374,005	+	yciH	LU632_RS12495	0.50	+1.7
2,374,248	-	pyrF	LU632_RS12500	0.11	-5.7
2,374,253	-	pyrF	LU632_RS12500	0.12	-0.6
2,374,253	-	pyrF	LU632_RS12500	0.12	-2.7
2,374,254	+	pyrF	LU632_RS12500	0.12	-2.4
2,374,254	+	pyrF	LU632_RS12500	0.12	-2.7
2,374,333	+	pyrF	LU632_RS12500	0.23	-3.5
2,374,469	-	pyrF	LU632_RS12500	0.42	-1.4
2,374,523	+	pyrF	LU632_RS12500	0.49	-0.6
2,374,658	-	pyrF	LU632_RS12500	0.68	-1.4
2,374,658	-	pyrF	LU632_RS12500	0.68	-2.8
2,374,663	+	pyrF	LU632_RS12500	0.69	-3.1
2,374,664	-	pyrF	LU632_RS12500	0.69	-1.4
2,374,666	+	pyrF	LU632_RS12500	0.69	-0.6
2,374,667	-	pyrF	LU632_RS12500	0.69	-1.7
2,374,676	-	pyrF	LU632_RS12500	0.71	-3.8
2,374,676	-	pyrF	LU632_RS12500	0.71	-2.4
2,374,836	+				-4.0
2,374,841	+				-3.5
2,374,842	-				-4.0
2,374,842	-				-5.1
2,374,904	+				-2.5
2,374,944	+				-0.6