Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12460

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,365,778	+				-0.7
2,365,851	+				-0.4
2,365,928	+				+0.0
2,366,009	+	eptB	LU632_RS12460	0.12	-0.1
2,366,009	+	eptB	LU632_RS12460	0.12	-1.2
2,366,010	-	eptB	LU632_RS12460	0.12	-0.0
2,366,010	-	eptB	LU632_RS12460	0.12	+0.5
2,366,156	+	eptB	LU632_RS12460	0.21	+0.2
2,366,156	+	eptB	LU632_RS12460	0.21	-0.6
2,366,159	-	eptB	LU632_RS12460	0.21	-0.3
2,366,159	-	eptB	LU632_RS12460	0.21	-0.6
2,366,167	+	eptB	LU632_RS12460	0.21	+1.8
2,366,168	-	eptB	LU632_RS12460	0.21	-1.5
2,366,278	+	eptB	LU632_RS12460	0.28	+0.4
2,366,278	+	eptB	LU632_RS12460	0.28	-0.7
2,366,279	-	eptB	LU632_RS12460	0.28	-1.7
2,366,284	+	eptB	LU632_RS12460	0.28	-0.4
2,366,544	-	eptB	LU632_RS12460	0.44	-2.2
2,366,585	+	eptB	LU632_RS12460	0.46	+0.0
2,366,585	+	eptB	LU632_RS12460	0.46	-0.1
2,366,586	-	eptB	LU632_RS12460	0.46	+2.5
2,366,623	+	eptB	LU632_RS12460	0.49	-0.9
2,366,669	+	eptB	LU632_RS12460	0.51	-0.2
2,366,700	-	eptB	LU632_RS12460	0.53	-0.9
2,366,771	-	eptB	LU632_RS12460	0.58	+0.3
2,366,771	-	eptB	LU632_RS12460	0.58	+0.4
2,366,774	+	eptB	LU632_RS12460	0.58	+0.6
2,366,833	+	eptB	LU632_RS12460	0.61	+1.2
2,366,834	-	eptB	LU632_RS12460	0.61	+0.1
2,366,834	-	eptB	LU632_RS12460	0.61	+0.2
2,366,875	+	eptB	LU632_RS12460	0.64	+0.2
2,366,876	-	eptB	LU632_RS12460	0.64	-0.6
2,366,876	-	eptB	LU632_RS12460	0.64	+0.6
2,366,899	+	eptB	LU632_RS12460	0.65	+0.3
2,367,054	+	eptB	LU632_RS12460	0.75	-0.0
2,367,195	-	eptB	LU632_RS12460	0.83	+0.3
2,367,214	+	eptB	LU632_RS12460	0.84	-0.6
2,367,214	+	eptB	LU632_RS12460	0.84	-0.2
2,367,351	+				-0.2
2,367,352	-				-2.7
2,367,367	-				-0.3
2,367,402	+				-0.1
2,367,588	+				-0.6
2,367,635	-				-1.6
2,367,640	+				-1.0
2,367,856	-				-0.4
2,367,945	+				+1.1
2,367,978	+				+1.2
2,368,012	-				-1.2
2,368,015	+				-0.1
2,368,070	+				-0.9
2,368,102	+				+1.2
2,368,106	+				+0.9
2,368,106	+				+1.0
2,368,106	+				-1.2
2,368,107	-				-0.2
2,368,107	-				-1.9
2,368,137	-				+2.3
2,368,191	+		LU632_RS12465	0.11	+0.5
2,368,192	-		LU632_RS12465	0.11	+1.0
2,368,261	+		LU632_RS12465	0.16	+0.4
2,368,262	-		LU632_RS12465	0.16	+0.8
2,368,262	-		LU632_RS12465	0.16	+1.5
2,368,293	+		LU632_RS12465	0.19	-0.2
2,368,369	-		LU632_RS12465	0.25	-2.0
2,368,379	+		LU632_RS12465	0.25	+0.4
2,368,422	+		LU632_RS12465	0.29	+0.7
2,368,457	+		LU632_RS12465	0.32	-1.4
2,368,458	-		LU632_RS12465	0.32	-1.4
2,368,458	-		LU632_RS12465	0.32	-0.6