Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12360

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,348,910	+		LU632_RS12345	0.54	+0.3
2,348,910	+		LU632_RS12345	0.54	+0.9
2,348,911	-		LU632_RS12345	0.54	-3.1
2,348,911	-		LU632_RS12345	0.54	-0.4
2,348,911	-		LU632_RS12345	0.54	+0.9
2,348,914	+		LU632_RS12345	0.56	-0.1
2,348,914	+		LU632_RS12345	0.56	-0.3
2,348,914	+		LU632_RS12345	0.56	-1.3
2,348,915	-		LU632_RS12345	0.56	+0.2
2,348,915	-		LU632_RS12345	0.56	-0.2
2,349,038	-				-1.6
2,349,093	+				+0.4
2,349,093	+				-0.2
2,349,093	+				+2.8
2,349,100	+				+1.5
2,349,101	-				-0.1
2,349,101	-				-0.2
2,349,101	-				-0.3
2,349,101	-				-2.8
2,349,136	+				-1.7
2,349,221	+				-0.3
2,349,228	-				+3.3
2,349,228	-				+0.6
2,349,335	+		LU632_RS12350	0.25	+0.4
2,349,484	+		LU632_RS12350	0.77	-0.7
2,349,540	+				-0.2
2,351,217	+				+3.1
2,351,238	+				+0.2
2,351,239	-				-0.4
2,351,241	+				-1.7
2,351,241	+				-0.6
2,351,359	-		LU632_RS12365	0.16	+0.4
2,351,361	+		LU632_RS12365	0.16	-0.8
2,351,401	+		LU632_RS12365	0.21	+0.3
2,351,404	+		LU632_RS12365	0.22	+0.1
2,351,404	+		LU632_RS12365	0.22	-0.9
2,351,435	+		LU632_RS12365	0.26	+1.1
2,351,435	-		LU632_RS12365	0.26	+0.3
2,351,464	+		LU632_RS12365	0.29	-0.6
2,351,464	+		LU632_RS12365	0.29	-0.7
2,351,465	-		LU632_RS12365	0.29	+1.3
2,351,470	+		LU632_RS12365	0.30	-1.2
2,351,496	+		LU632_RS12365	0.33	+0.3
2,351,497	-		LU632_RS12365	0.34	+2.4
2,351,497	-		LU632_RS12365	0.34	+1.4
2,351,569	+		LU632_RS12365	0.43	-4.3
2,351,569	+		LU632_RS12365	0.43	-1.6
2,351,606	-		LU632_RS12365	0.48	+1.2
2,351,651	-		LU632_RS12365	0.53	+1.5
2,351,651	-		LU632_RS12365	0.53	+0.8
2,351,654	-		LU632_RS12365	0.54	-0.6
2,351,661	+		LU632_RS12365	0.55	+0.8
2,351,687	+		LU632_RS12365	0.58	-0.9
2,351,688	-		LU632_RS12365	0.58	-1.5
2,351,688	-		LU632_RS12365	0.58	-0.1
2,351,688	-		LU632_RS12365	0.58	-0.7
2,351,689	+		LU632_RS12365	0.58	-1.2
2,351,689	+		LU632_RS12365	0.58	-0.9
2,351,690	-		LU632_RS12365	0.59	+0.1
2,351,690	-		LU632_RS12365	0.59	+1.3
2,351,691	+		LU632_RS12365	0.59	-0.6
2,351,691	+		LU632_RS12365	0.59	+0.0
2,351,691	+		LU632_RS12365	0.59	-0.0
2,351,691	+		LU632_RS12365	0.59	+0.5
2,351,692	-		LU632_RS12365	0.59	+1.4
2,351,692	-		LU632_RS12365	0.59	-1.3
2,351,692	-		LU632_RS12365	0.59	-0.9
2,351,704	+		LU632_RS12365	0.60	+0.4
2,351,705	-		LU632_RS12365	0.60	+1.1
2,351,705	-		LU632_RS12365	0.60	-1.2
2,351,705	-		LU632_RS12365	0.60	+0.9
2,351,836	+		LU632_RS12365	0.77	+0.0
2,351,837	-		LU632_RS12365	0.78	+0.3
2,351,841	+		LU632_RS12365	0.78	+0.6
2,351,991	+				-0.6