Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12320

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,339,949	-		LU632_RS12315	0.26	+0.7
2,340,098	+		LU632_RS12315	0.40	+3.1
2,340,098	+		LU632_RS12315	0.40	-1.7
2,340,098	+		LU632_RS12315	0.40	-0.6
2,340,102	+		LU632_RS12315	0.40	+0.0
2,340,103	-		LU632_RS12315	0.40	+1.5
2,340,103	-		LU632_RS12315	0.40	+1.4
2,340,103	-		LU632_RS12315	0.40	+0.3
2,340,103	-		LU632_RS12315	0.40	-2.2
2,340,103	-		LU632_RS12315	0.40	-1.2
2,340,103	-		LU632_RS12315	0.40	+1.1
2,340,167	-		LU632_RS12315	0.46	-0.6
2,340,167	-		LU632_RS12315	0.46	-0.9
2,340,232	+		LU632_RS12315	0.52	-0.4
2,340,320	-		LU632_RS12315	0.59	-1.2
2,340,320	-		LU632_RS12315	0.59	-0.5
2,340,320	-		LU632_RS12315	0.59	-1.0
2,340,320	-		LU632_RS12315	0.59	+1.6
2,340,381	+		LU632_RS12315	0.65	-1.7
2,340,396	-		LU632_RS12315	0.66	+4.6
2,340,411	-		LU632_RS12315	0.68	-3.2
2,340,499	-		LU632_RS12315	0.76	-2.0
2,340,499	-		LU632_RS12315	0.76	-2.0
2,340,514	+		LU632_RS12315	0.77	+0.0
2,340,642	+		LU632_RS12315	0.88	+0.3
2,340,646	-		LU632_RS12315	0.89	+0.2
2,340,646	-		LU632_RS12315	0.89	+0.7
2,340,693	+				+0.3
2,340,693	+				-1.6
2,340,693	+				+1.0
2,340,694	-				-0.1
2,340,694	-				-2.7
2,340,694	-				-0.9
2,340,694	-				+1.0
2,340,726	-				-1.1
2,340,740	+				-0.4
2,340,853	+				-1.0
2,340,854	-				-1.2
2,341,005	+	msrA	LU632_RS12320	0.29	+0.4
2,341,005	+	msrA	LU632_RS12320	0.29	-0.2
2,341,006	-	msrA	LU632_RS12320	0.29	-0.6
2,341,130	+	msrA	LU632_RS12320	0.52	+0.4
2,341,131	-	msrA	LU632_RS12320	0.53	-1.4
2,341,171	-	msrA	LU632_RS12320	0.60	-2.0
2,341,246	-	msrA	LU632_RS12320	0.74	+0.2
2,341,256	-	msrA	LU632_RS12320	0.76	-1.0
2,341,256	-	msrA	LU632_RS12320	0.76	-0.2
2,341,286	-	msrA	LU632_RS12320	0.82	-1.2
2,341,382	+				-0.2
2,341,383	-				-1.5
2,341,465	-				-0.4
2,341,621	+				-2.2
2,341,639	-				+1.1
2,341,640	+				+1.4
2,341,640	+				+0.7
2,341,640	+				-1.2
2,341,640	+				+1.1
2,341,641	-				+0.3
2,341,641	-				+0.4
2,341,641	-				+1.0
2,341,641	-				+0.4
2,341,641	-				+0.7
2,341,641	-				+0.6
2,341,673	+				+1.1
2,341,673	+				+0.0
2,341,758	+				+0.7
2,341,759	-				+0.4
2,341,864	-				-1.6
2,341,885	+				+0.4
2,341,894	-				+0.4
2,342,333	+				-1.2
2,342,360	+				+1.0