Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12225

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,320,392	+				+0.7
2,320,393	-				-1.3
2,320,488	-				-0.1
2,320,511	+				-1.0
2,320,530	-				-0.7
2,320,541	-				-0.5
2,320,602	-		LU632_RS12225	0.13	+0.1
2,320,693	+		LU632_RS12225	0.19	+1.2
2,320,693	+		LU632_RS12225	0.19	+0.4
2,320,693	+		LU632_RS12225	0.19	-0.3
2,320,693	+		LU632_RS12225	0.19	-0.8
2,320,694	-		LU632_RS12225	0.19	+2.0
2,320,694	-		LU632_RS12225	0.19	-0.2
2,320,786	-		LU632_RS12225	0.25	-0.2
2,320,802	+		LU632_RS12225	0.26	-2.0
2,320,802	+		LU632_RS12225	0.26	-0.1
2,320,803	-		LU632_RS12225	0.26	-2.9
2,320,803	-		LU632_RS12225	0.26	-1.4
2,320,900	+		LU632_RS12225	0.32	+0.4
2,320,928	-		LU632_RS12225	0.34	-0.2
2,321,015	-		LU632_RS12225	0.40	-1.2
2,321,106	+		LU632_RS12225	0.45	-0.3
2,321,171	+		LU632_RS12225	0.50	+1.0
2,321,174	-		LU632_RS12225	0.50	-0.1
2,321,174	-		LU632_RS12225	0.50	+1.4
2,321,182	-		LU632_RS12225	0.50	+3.2
2,321,187	-		LU632_RS12225	0.51	+0.6
2,321,187	-		LU632_RS12225	0.51	+0.1
2,321,187	-		LU632_RS12225	0.51	+2.7
2,321,190	+		LU632_RS12225	0.51	-1.6
2,321,269	+		LU632_RS12225	0.56	+1.4
2,321,269	+		LU632_RS12225	0.56	-0.3
2,321,270	-		LU632_RS12225	0.56	-1.2
2,321,270	-		LU632_RS12225	0.56	+0.4
2,321,287	-		LU632_RS12225	0.57	-0.6
2,321,290	-		LU632_RS12225	0.57	-0.3
2,321,290	-		LU632_RS12225	0.57	-0.4
2,321,291	+		LU632_RS12225	0.57	-3.4
2,321,292	-		LU632_RS12225	0.57	+2.2
2,321,292	-		LU632_RS12225	0.57	+0.0
2,321,295	+		LU632_RS12225	0.58	-0.4
2,321,376	-		LU632_RS12225	0.63	+1.0
2,321,480	+		LU632_RS12225	0.70	-1.2
2,321,480	+		LU632_RS12225	0.70	-0.2
2,321,481	-		LU632_RS12225	0.70	+0.1
2,321,481	-		LU632_RS12225	0.70	+0.1
2,321,528	+		LU632_RS12225	0.73	-1.8
2,321,529	-		LU632_RS12225	0.73	-1.0
2,321,529	-		LU632_RS12225	0.73	+3.0
2,321,559	-		LU632_RS12225	0.75	+2.0
2,321,599	-		LU632_RS12225	0.77	-1.2
2,321,709	-		LU632_RS12225	0.84	-1.2
2,321,726	-		LU632_RS12225	0.86	-0.2
2,321,731	-		LU632_RS12225	0.86	-1.2
2,321,751	-		LU632_RS12225	0.87	-0.4
2,321,775	-		LU632_RS12225	0.89	-0.3
2,321,775	-		LU632_RS12225	0.89	+1.4
2,321,836	-				+0.7
2,321,857	+				-0.8
2,321,857	+				+1.3
2,321,858	-				-2.7
2,321,867	+				-2.6
2,321,867	+				+0.2
2,321,868	-				-1.7
2,321,868	-				+0.4
2,321,868	-				+0.4
2,321,870	+				-1.9
2,322,095	+	ascB	LU632_RS12230	0.10	+0.4
2,322,116	+	ascB	LU632_RS12230	0.12	+0.3
2,322,158	+	ascB	LU632_RS12230	0.15	-1.6
2,322,160	+	ascB	LU632_RS12230	0.15	-0.6
2,322,160	+	ascB	LU632_RS12230	0.15	+0.8
2,322,300	+	ascB	LU632_RS12230	0.25	+2.0
2,322,364	-	ascB	LU632_RS12230	0.30	+1.4
2,322,408	+	ascB	LU632_RS12230	0.33	-0.9
2,322,409	-	ascB	LU632_RS12230	0.33	-1.0
2,322,477	-	ascB	LU632_RS12230	0.38	-2.2
2,322,477	-	ascB	LU632_RS12230	0.38	-1.3
2,322,496	+	ascB	LU632_RS12230	0.39	-0.9
2,322,522	-	ascB	LU632_RS12230	0.41	-0.6
2,322,522	-	ascB	LU632_RS12230	0.41	+1.2
2,322,522	-	ascB	LU632_RS12230	0.41	+1.1
2,322,626	+	ascB	LU632_RS12230	0.48	-2.7
2,322,626	+	ascB	LU632_RS12230	0.48	-1.0
2,322,626	+	ascB	LU632_RS12230	0.48	+2.4
2,322,626	+	ascB	LU632_RS12230	0.48	-0.1
2,322,626	+	ascB	LU632_RS12230	0.48	+0.1
2,322,627	-	ascB	LU632_RS12230	0.48	+4.8
2,322,627	-	ascB	LU632_RS12230	0.48	-0.6
2,322,627	-	ascB	LU632_RS12230	0.48	-1.1
2,322,627	-	ascB	LU632_RS12230	0.48	-0.2
2,322,649	-	ascB	LU632_RS12230	0.50	+0.9
2,322,662	+	ascB	LU632_RS12230	0.51	-0.6
2,322,751	-	ascB	LU632_RS12230	0.57	+2.6
2,322,752	+	ascB	LU632_RS12230	0.57	+0.2
2,322,753	-	ascB	LU632_RS12230	0.57	+0.4
2,322,753	-	ascB	LU632_RS12230	0.57	-0.2
2,322,753	-	ascB	LU632_RS12230	0.57	+0.3
2,322,781	+	ascB	LU632_RS12230	0.59	+0.8
2,322,781	+	ascB	LU632_RS12230	0.59	+0.2
2,322,782	-	ascB	LU632_RS12230	0.60	-0.8
2,322,782	-	ascB	LU632_RS12230	0.60	+0.3
2,322,853	-	ascB	LU632_RS12230	0.65	+0.0
2,322,914	+	ascB	LU632_RS12230	0.69	-0.8
2,322,915	-	ascB	LU632_RS12230	0.69	-1.0
2,322,923	+	ascB	LU632_RS12230	0.70	-1.2