Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11455

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,185,655	-				-0.6
2,185,655	-				+0.2
2,185,655	-				+2.3
2,185,768	+				-0.5
2,185,782	-				+0.0
2,185,796	+				-0.7
2,185,796	+				-1.7
2,185,815	+				+3.8
2,185,887	-				-0.5
2,185,887	-				+0.4
2,185,979	-				+2.2
2,186,013	+		LU632_RS11450	0.17	+1.1
2,186,014	-		LU632_RS11450	0.17	+1.2
2,186,027	-		LU632_RS11450	0.20	+1.1
2,186,055	+		LU632_RS11450	0.27	+1.1
2,186,143	+		LU632_RS11450	0.48	-0.8
2,186,144	-		LU632_RS11450	0.49	-1.2
2,186,171	-		LU632_RS11450	0.55	-0.3
2,186,171	-		LU632_RS11450	0.55	+0.6
2,186,171	-		LU632_RS11450	0.55	+1.2
2,186,380	+				+1.4
2,186,389	-				-0.8
2,186,428	-				+0.2
2,186,428	-				-0.5
2,186,441	+				+0.8
2,186,443	+				+0.8
2,186,446	+				+1.9
2,186,478	-				-0.8
2,186,480	+				+0.1
2,186,523	+				-0.2
2,186,523	+				-1.7
2,186,523	+				+0.9
2,186,540	-				-1.5
2,186,547	+				-2.0
2,186,617	+	rstA	LU632_RS11455	0.11	-0.2
2,186,741	-	rstA	LU632_RS11455	0.28	+0.2
2,186,743	+	rstA	LU632_RS11455	0.29	-0.9
2,186,743	+	rstA	LU632_RS11455	0.29	+0.0
2,186,746	+	rstA	LU632_RS11455	0.29	-0.7
2,186,800	+	rstA	LU632_RS11455	0.36	-2.4
2,186,831	+	rstA	LU632_RS11455	0.41	-2.0
2,186,831	+	rstA	LU632_RS11455	0.41	+0.3
2,186,831	+	rstA	LU632_RS11455	0.41	-1.1
2,186,831	+	rstA	LU632_RS11455	0.41	-1.1
2,186,839	+	rstA	LU632_RS11455	0.42	+0.6
2,186,839	+	rstA	LU632_RS11455	0.42	-2.7
2,187,013	+	rstA	LU632_RS11455	0.66	-1.0
2,187,120	-	rstA	LU632_RS11455	0.80	-0.1
2,187,120	-	rstA	LU632_RS11455	0.80	-1.5
2,187,141	+	rstA	LU632_RS11455	0.83	+0.1
2,187,141	+	rstA	LU632_RS11455	0.83	-0.9
2,187,142	-	rstA	LU632_RS11455	0.83	-0.2
2,187,151	+	rstA	LU632_RS11455	0.85	-1.6
2,187,213	+				-1.0
2,187,221	-				-1.2
2,187,221	-				-1.2
2,187,273	+				-2.0
2,187,274	-				-2.4
2,187,283	+				+0.5
2,187,339	+				-0.2
2,187,339	+				-2.8
2,187,400	+	rstB	LU632_RS11460	0.11	+1.3
2,187,400	+	rstB	LU632_RS11460	0.11	-2.2
2,187,401	-	rstB	LU632_RS11460	0.11	-1.0
2,187,476	+	rstB	LU632_RS11460	0.17	+0.4
2,187,511	+	rstB	LU632_RS11460	0.19	-0.0
2,187,511	+	rstB	LU632_RS11460	0.19	-0.8
2,187,512	-	rstB	LU632_RS11460	0.19	-1.0
2,187,512	-	rstB	LU632_RS11460	0.19	-0.7
2,187,577	+	rstB	LU632_RS11460	0.24	-1.2
2,187,578	-	rstB	LU632_RS11460	0.25	-0.2
2,187,578	-	rstB	LU632_RS11460	0.25	-1.0
2,187,579	+	rstB	LU632_RS11460	0.25	-1.0
2,187,580	-	rstB	LU632_RS11460	0.25	-1.2
2,187,611	-	rstB	LU632_RS11460	0.27	-2.4
2,187,611	-	rstB	LU632_RS11460	0.27	+1.3
2,187,720	+	rstB	LU632_RS11460	0.35	+1.2
2,187,906	-	rstB	LU632_RS11460	0.50	+0.6
2,187,912	+	rstB	LU632_RS11460	0.50	+0.1
2,187,913	-	rstB	LU632_RS11460	0.50	+1.3
2,187,941	+	rstB	LU632_RS11460	0.53	+0.7
2,188,052	-	rstB	LU632_RS11460	0.61	-0.4
2,188,052	-	rstB	LU632_RS11460	0.61	-0.1
2,188,083	+	rstB	LU632_RS11460	0.63	-0.5
2,188,088	+	rstB	LU632_RS11460	0.64	-1.1
2,188,191	+	rstB	LU632_RS11460	0.72	-1.6
2,188,192	-	rstB	LU632_RS11460	0.72	+1.3
2,188,192	-	rstB	LU632_RS11460	0.72	-0.7
2,188,198	-	rstB	LU632_RS11460	0.72	-1.3