Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10780

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,054,873	-				-0.8
2,054,920	+		LU632_RS10775	0.11	+0.2
2,054,920	+		LU632_RS10775	0.11	+0.5
2,054,920	+		LU632_RS10775	0.11	+1.7
2,054,959	-		LU632_RS10775	0.15	+1.4
2,054,989	-		LU632_RS10775	0.18	+1.1
2,054,998	-		LU632_RS10775	0.19	+0.8
2,055,172	-		LU632_RS10775	0.37	-0.2
2,055,172	-		LU632_RS10775	0.37	-0.6
2,055,203	-		LU632_RS10775	0.41	+1.1
2,055,245	+		LU632_RS10775	0.45	-1.9
2,055,245	+		LU632_RS10775	0.45	+0.8
2,055,437	+		LU632_RS10775	0.65	-1.5
2,055,437	+		LU632_RS10775	0.65	+0.7
2,055,604	-		LU632_RS10775	0.83	+0.2
2,055,612	-		LU632_RS10775	0.84	-0.6
2,055,618	-		LU632_RS10775	0.84	-0.8
2,055,701	-				+1.6
2,055,780	+				-0.2
2,055,825	-				-0.6
2,055,832	+				+0.8
2,055,833	-				-1.4
2,055,833	-				-0.6
2,055,833	-				-1.7
2,055,940	+		LU632_RS10780	0.21	-1.2
2,055,941	-		LU632_RS10780	0.21	-1.9
2,056,037	+		LU632_RS10780	0.33	-0.2
2,056,037	+		LU632_RS10780	0.33	+0.7
2,056,038	-		LU632_RS10780	0.33	-0.5
2,056,038	-		LU632_RS10780	0.33	-1.2
2,056,038	-		LU632_RS10780	0.33	-0.8
2,056,085	-		LU632_RS10780	0.39	-0.2
2,056,086	+		LU632_RS10780	0.40	-0.6
2,056,092	-		LU632_RS10780	0.40	+1.3
2,056,133	+		LU632_RS10780	0.46	-0.4
2,056,133	+		LU632_RS10780	0.46	-1.9
2,056,174	+		LU632_RS10780	0.51	-0.5
2,056,175	-		LU632_RS10780	0.51	-1.2
2,056,176	+		LU632_RS10780	0.51	+0.4
2,056,177	-		LU632_RS10780	0.51	-1.6
2,056,277	-		LU632_RS10780	0.64	-1.1
2,056,408	+		LU632_RS10780	0.81	+0.0
2,056,408	+		LU632_RS10780	0.81	+0.4
2,056,408	+		LU632_RS10780	0.81	-0.3
2,056,484	+				+2.2
2,056,485	-				+0.1
2,056,508	-				-0.2
2,056,508	-				-2.1
2,056,535	-				-1.2
2,056,542	+				-0.9
2,056,543	-				-2.1
2,056,546	+				+1.6
2,056,547	-				-0.9
2,056,586	+				-0.2
2,056,587	-				+1.4
2,056,607	+				-0.6
2,056,608	-				-0.4
2,056,668	+				+2.6
2,056,668	+				-0.9
2,056,668	+				+1.4
2,056,731	+	tagH	LU632_RS10785	0.15	+0.4
2,056,732	-	tagH	LU632_RS10785	0.15	-0.1
2,056,913	+	tagH	LU632_RS10785	0.31	+1.8
2,056,914	-	tagH	LU632_RS10785	0.31	-0.3
2,056,963	-	tagH	LU632_RS10785	0.35	+0.4
2,057,109	+	tagH	LU632_RS10785	0.48	-1.8
2,057,109	+	tagH	LU632_RS10785	0.48	+0.4
2,057,112	+	tagH	LU632_RS10785	0.48	+1.2
2,057,113	-	tagH	LU632_RS10785	0.48	-1.2
2,057,113	-	tagH	LU632_RS10785	0.48	+0.1
2,057,113	-	tagH	LU632_RS10785	0.48	+0.4
2,057,196	+	tagH	LU632_RS10785	0.55	-0.2
2,057,196	+	tagH	LU632_RS10785	0.55	-0.9
2,057,196	+	tagH	LU632_RS10785	0.55	+0.8
2,057,197	-	tagH	LU632_RS10785	0.55	+1.4
2,057,197	-	tagH	LU632_RS10785	0.55	+1.4
2,057,197	-	tagH	LU632_RS10785	0.55	-1.4
2,057,225	-	tagH	LU632_RS10785	0.58	-0.6
2,057,451	+	tagH	LU632_RS10785	0.77	+3.0
2,057,452	-	tagH	LU632_RS10785	0.77	-0.6
2,057,452	-	tagH	LU632_RS10785	0.77	+0.7
2,057,452	-	tagH	LU632_RS10785	0.77	+0.6
2,057,502	+	tagH	LU632_RS10785	0.82	+2.4
2,057,503	-	tagH	LU632_RS10785	0.82	-0.3
2,057,503	-	tagH	LU632_RS10785	0.82	+0.4
2,057,554	-	tagH	LU632_RS10785	0.86	+0.6