Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10770

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
2,052,353	-				+0.2
2,052,564	-				-0.4
2,052,602	+				-1.4
2,052,659	+				+0.3
2,052,659	+				+0.3
2,052,920	+		LU632_RS10765	0.38	-0.2
2,052,984	+		LU632_RS10765	0.48	-1.2
2,052,985	-		LU632_RS10765	0.48	+3.3
2,053,056	+		LU632_RS10765	0.58	-0.6
2,053,079	+		LU632_RS10765	0.62	-1.3
2,053,079	+		LU632_RS10765	0.62	-0.9
2,053,079	+		LU632_RS10765	0.62	-0.0
2,053,103	-		LU632_RS10765	0.65	-0.2
2,053,109	+		LU632_RS10765	0.66	+1.2
2,053,110	-		LU632_RS10765	0.66	+0.7
2,053,110	-		LU632_RS10765	0.66	-0.1
2,053,118	+		LU632_RS10765	0.67	+0.5
2,053,119	-		LU632_RS10765	0.67	+1.0
2,053,121	+		LU632_RS10765	0.68	+0.4
2,053,144	-		LU632_RS10765	0.71	-0.4
2,053,144	-		LU632_RS10765	0.71	+0.4
2,053,221	+		LU632_RS10765	0.82	-1.9
2,053,264	-		LU632_RS10765	0.89	-0.2
2,053,306	+				+0.5
2,053,307	-				+0.1
2,053,307	-				-0.2
2,053,319	+				-0.2
2,053,320	-				+0.8
2,053,364	+				+1.7
2,053,373	-				+1.6
2,053,676	+		LU632_RS10770	0.23	+1.1
2,053,676	+		LU632_RS10770	0.23	-0.3
2,053,676	+		LU632_RS10770	0.23	-2.1
2,053,677	-		LU632_RS10770	0.23	+0.2
2,053,677	-		LU632_RS10770	0.23	+1.3
2,053,677	-		LU632_RS10770	0.23	+0.8
2,053,677	-		LU632_RS10770	0.23	+1.7
2,053,695	-		LU632_RS10770	0.24	+0.4
2,053,695	-		LU632_RS10770	0.24	+0.3
2,053,775	-		LU632_RS10770	0.30	+0.4
2,053,793	+		LU632_RS10770	0.31	-0.2
2,054,060	+		LU632_RS10770	0.50	-2.2
2,054,060	+		LU632_RS10770	0.50	+0.4
2,054,060	+		LU632_RS10770	0.50	+0.4
2,054,061	-		LU632_RS10770	0.50	+0.4
2,054,061	-		LU632_RS10770	0.50	-0.2
2,054,061	-		LU632_RS10770	0.50	+0.4
2,054,061	-		LU632_RS10770	0.50	+1.9
2,054,079	+		LU632_RS10770	0.51	+1.4
2,054,079	+		LU632_RS10770	0.51	+0.3
2,054,083	+		LU632_RS10770	0.52	-0.2
2,054,083	+		LU632_RS10770	0.52	+1.3
2,054,084	-		LU632_RS10770	0.52	-0.2
2,054,124	+		LU632_RS10770	0.55	+1.7
2,054,125	-		LU632_RS10770	0.55	-0.6
2,054,125	-		LU632_RS10770	0.55	-1.4
2,054,387	+		LU632_RS10770	0.73	+1.8
2,054,397	+		LU632_RS10770	0.74	+1.6
2,054,397	+		LU632_RS10770	0.74	+1.3
2,054,397	+		LU632_RS10770	0.74	-0.6
2,054,398	-		LU632_RS10770	0.74	+2.6
2,054,400	+		LU632_RS10770	0.74	+0.2
2,054,415	+		LU632_RS10770	0.75	-0.2
2,054,415	+		LU632_RS10770	0.75	+1.8
2,054,415	+		LU632_RS10770	0.75	+2.7
2,054,457	-		LU632_RS10770	0.78	+0.4
2,054,501	-		LU632_RS10770	0.81	-2.2
2,054,507	-		LU632_RS10770	0.82	+1.1
2,054,507	-		LU632_RS10770	0.82	+0.6
2,054,510	-		LU632_RS10770	0.82	+1.9
2,054,522	-		LU632_RS10770	0.83	-0.6
2,054,522	-		LU632_RS10770	0.83	+4.2
2,054,526	-		LU632_RS10770	0.83	-0.5
2,054,557	+		LU632_RS10770	0.85	+0.2
2,054,558	-		LU632_RS10770	0.85	+0.4
2,054,729	+				+0.4
2,054,729	+				+0.4
2,054,730	-				+1.5
2,054,744	-				-0.0
2,054,768	-				+0.1
2,054,768	-				+1.8
2,054,873	-				-0.8
2,054,920	+		LU632_RS10775	0.11	+0.2
2,054,920	+		LU632_RS10775	0.11	+0.5
2,054,920	+		LU632_RS10775	0.11	+1.7
2,054,959	-		LU632_RS10775	0.15	+1.4
2,054,989	-		LU632_RS10775	0.18	+1.1
2,054,998	-		LU632_RS10775	0.19	+0.8
2,055,172	-		LU632_RS10775	0.37	-0.2
2,055,172	-		LU632_RS10775	0.37	-0.6
2,055,203	-		LU632_RS10775	0.41	+1.1
2,055,245	+		LU632_RS10775	0.45	-1.9
2,055,245	+		LU632_RS10775	0.45	+0.8
2,055,437	+		LU632_RS10775	0.65	-1.5
2,055,437	+		LU632_RS10775	0.65	+0.7
2,055,604	-		LU632_RS10775	0.83	+0.2
2,055,612	-		LU632_RS10775	0.84	-0.6
2,055,618	-		LU632_RS10775	0.84	-0.8
2,055,701	-				+1.6