Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10375

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,982,081	-				+0.8
1,982,084	+				+0.0
1,982,084	+				+0.2
1,982,084	+				-0.2
1,982,084	+				+0.0
1,982,085	-				-1.1
1,982,115	-				-0.1
1,982,190	-				+0.2
1,982,252	-		LU632_RS10370	0.14	+1.7
1,982,279	+		LU632_RS10370	0.18	-0.6
1,982,289	+		LU632_RS10370	0.20	+0.6
1,982,290	-		LU632_RS10370	0.20	+0.3
1,982,294	+		LU632_RS10370	0.21	-1.9
1,982,294	+		LU632_RS10370	0.21	+1.4
1,982,294	+		LU632_RS10370	0.21	-0.6
1,982,295	-		LU632_RS10370	0.21	+0.6
1,982,295	-		LU632_RS10370	0.21	-1.6
1,982,295	-		LU632_RS10370	0.21	+0.4
1,982,368	-		LU632_RS10370	0.32	+0.2
1,982,393	+		LU632_RS10370	0.36	-1.9
1,982,418	-		LU632_RS10370	0.40	-0.7
1,982,533	-		LU632_RS10370	0.58	-2.4
1,982,535	-		LU632_RS10370	0.59	-2.8
1,982,535	-		LU632_RS10370	0.59	-1.2
1,982,541	-		LU632_RS10370	0.60	-0.2
1,982,541	-		LU632_RS10370	0.60	-1.7
1,982,563	-		LU632_RS10370	0.63	+0.4
1,982,600	-		LU632_RS10370	0.69	-0.4
1,982,650	-		LU632_RS10370	0.77	+0.3
1,982,721	-		LU632_RS10370	0.88	-0.9
1,982,726	-		LU632_RS10370	0.89	-1.3
1,982,841	-				-0.0
1,982,891	+				-0.5
1,982,976	-				+1.8
1,983,045	+				-2.3
1,983,050	+				-1.7
1,983,053	+				-0.3
1,983,053	+				+0.3
1,983,262	+		LU632_RS10375	0.24	-1.4
1,983,262	+		LU632_RS10375	0.24	-1.0
1,983,927	+				+2.8
1,983,990	+				+0.0
1,983,990	+				-1.2
1,983,990	+				-0.4
1,983,995	+				-0.9
1,983,999	-				-0.2
1,983,999	-				-1.4
1,984,076	+				+0.7
1,984,077	-				-0.4
1,984,157	-				+0.4
1,984,252	-				+1.3
1,984,255	+				+0.9
1,984,302	+				+1.9
1,984,337	-				-1.2
1,984,453	+	flgN	LU632_RS10380	0.31	+2.6
1,984,454	-	flgN	LU632_RS10380	0.31	-0.6
1,984,454	-	flgN	LU632_RS10380	0.31	-0.6
1,984,457	+	flgN	LU632_RS10380	0.32	-0.3
1,984,533	+	flgN	LU632_RS10380	0.50	-0.2
1,984,688	+	flgN	LU632_RS10380	0.85	+0.1
1,984,688	+	flgN	LU632_RS10380	0.85	-1.2
1,984,688	+	flgN	LU632_RS10380	0.85	-0.3