Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09860

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,876,508	-				-2.2
1,876,508	-				-1.1
1,876,614	-				+0.1
1,876,621	-				+2.3
1,876,645	+				+0.2
1,876,676	+				-2.7
1,876,751	+		LU632_RS09850	0.31	+0.2
1,876,751	+		LU632_RS09850	0.31	+3.3
1,876,752	-		LU632_RS09850	0.32	+0.3
1,876,820	+		LU632_RS09850	0.79	+0.6
1,876,820	+		LU632_RS09850	0.79	+1.2
1,876,820	+		LU632_RS09850	0.79	+0.4
1,876,821	-		LU632_RS09850	0.80	-1.7
1,876,911	+				-1.2
1,876,955	+				+0.8
1,876,955	+				+0.9
1,877,162	+		LU632_RS09855	0.87	-1.5
1,877,163	-		LU632_RS09855	0.87	-0.1
1,877,188	-				-0.5
1,877,211	-				-0.2
1,877,268	-				+0.9
1,877,307	+				+0.8
1,877,307	+				-0.2
1,877,308	-				-1.6
1,877,414	-				+1.7
1,877,629	-	elyC	LU632_RS09860	0.38	+2.3
1,877,635	-	elyC	LU632_RS09860	0.39	+0.0
1,877,795	-	elyC	LU632_RS09860	0.60	-0.3
1,877,799	+	elyC	LU632_RS09860	0.60	-0.9
1,877,835	-	elyC	LU632_RS09860	0.65	+1.6
1,877,858	+	elyC	LU632_RS09860	0.68	-0.0
1,877,858	+	elyC	LU632_RS09860	0.68	-1.0
1,877,859	-	elyC	LU632_RS09860	0.68	-1.4
1,877,859	-	elyC	LU632_RS09860	0.68	-2.2
1,877,941	+	elyC	LU632_RS09860	0.79	+0.6
1,878,016	+	elyC	LU632_RS09860	0.89	+0.7
1,878,017	-	elyC	LU632_RS09860	0.89	+0.3
1,878,062	-				+0.2
1,878,062	-				-1.9
1,878,177	+				-0.4
1,878,177	+				+0.7
1,878,178	-				-1.5
1,878,188	-				-1.1
1,878,276	-				-0.1
1,878,279	+				-0.0
1,878,279	+				-0.1
1,878,279	+				-1.1
1,878,285	-				-0.1
1,878,518	+	cmoM	LU632_RS09865	0.37	+0.2
1,878,631	+	cmoM	LU632_RS09865	0.51	-0.8
1,878,633	+	cmoM	LU632_RS09865	0.51	-1.2
1,878,728	+	cmoM	LU632_RS09865	0.63	-0.9
1,878,728	+	cmoM	LU632_RS09865	0.63	-0.5
1,878,728	+	cmoM	LU632_RS09865	0.63	-2.7
1,878,801	+	cmoM	LU632_RS09865	0.73	+0.6
1,878,867	+	cmoM	LU632_RS09865	0.81	+0.2
1,878,867	+	cmoM	LU632_RS09865	0.81	-1.1
1,878,867	+	cmoM	LU632_RS09865	0.81	+0.1
1,878,867	+	cmoM	LU632_RS09865	0.81	-2.5
1,878,869	+	cmoM	LU632_RS09865	0.81	-2.1
1,878,869	+	cmoM	LU632_RS09865	0.81	+0.2
1,878,869	+	cmoM	LU632_RS09865	0.81	-2.4
1,878,966	+				-0.5
1,878,968	+				-1.5