Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09670

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.9
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.9
1,831,962	+	rlmC	LU632_RS09660	0.88	-0.2
1,831,962	+	rlmC	LU632_RS09660	0.88	+0.4
1,831,963	-	rlmC	LU632_RS09660	0.88	+0.2
1,831,963	-	rlmC	LU632_RS09660	0.88	-0.1
1,832,020	+				+0.2
1,832,020	+				+0.8
1,832,020	+				-0.4
1,832,020	+				-1.2
1,832,021	-				-1.3
1,832,021	-				+0.0
1,832,048	-				+1.5
1,832,050	-				-0.6
1,832,189	+				+0.9
1,832,190	-				-1.6
1,832,358	-		LU632_RS09665	0.37	+0.1
1,832,400	+		LU632_RS09665	0.45	-0.9
1,832,400	+		LU632_RS09665	0.45	+0.3
1,832,401	-		LU632_RS09665	0.45	+1.5
1,832,403	-		LU632_RS09665	0.46	-0.8
1,832,403	-		LU632_RS09665	0.46	+1.5
1,832,460	+		LU632_RS09665	0.57	+0.3
1,832,527	+		LU632_RS09665	0.70	-1.3
1,832,528	-		LU632_RS09665	0.70	+0.9
1,832,535	-		LU632_RS09665	0.71	-0.3
1,832,571	+		LU632_RS09665	0.78	+2.1
1,832,571	+		LU632_RS09665	0.78	+0.2
1,832,572	-		LU632_RS09665	0.78	+1.3
1,832,572	-		LU632_RS09665	0.78	+0.3
1,832,595	-		LU632_RS09665	0.83	+2.0
1,832,675	+				+5.4
1,832,675	+				+0.8
1,832,676	-				-0.1
1,832,745	+				-0.3
1,832,746	-				-1.5
1,832,810	-				-1.1
1,832,813	+				+1.5
1,832,844	+				+0.3
1,832,845	-				+2.1
1,832,910	-				-0.3
1,832,910	-				+1.3
1,832,910	-				-0.4
1,832,910	-				+0.3
1,832,910	-				-2.3
1,832,910	-				+0.0
1,832,910	-				+1.2
1,832,988	+				-1.9
1,833,020	-	artM	LU632_RS09670	0.12	-0.5
1,833,055	+	artM	LU632_RS09670	0.17	-2.0
1,833,056	-	artM	LU632_RS09670	0.17	+0.2
1,833,125	+	artM	LU632_RS09670	0.28	-1.1
1,833,125	+	artM	LU632_RS09670	0.28	-2.0
1,833,126	-	artM	LU632_RS09670	0.28	-0.5
1,833,142	-	artM	LU632_RS09670	0.30	-0.4
1,833,211	-	artM	LU632_RS09670	0.41	-0.5
1,833,216	-	artM	LU632_RS09670	0.41	-0.3
1,833,404	-	artM	LU632_RS09670	0.69	-2.2
1,833,404	-	artM	LU632_RS09670	0.69	-0.8
1,833,406	+	artM	LU632_RS09670	0.70	-1.5
1,833,406	+	artM	LU632_RS09670	0.70	-1.1
1,833,407	-	artM	LU632_RS09670	0.70	+2.3
1,833,595	-				-3.1
1,833,599	-				-0.5
1,833,599	-				+2.1
1,833,655	+				-0.8
1,833,656	-				+0.9
1,833,656	-				+1.3
1,833,690	+	artQ	LU632_RS09675	0.12	+0.3
1,833,695	-	artQ	LU632_RS09675	0.13	-0.3
1,833,709	+	artQ	LU632_RS09675	0.15	-1.4
1,833,710	-	artQ	LU632_RS09675	0.15	+1.5
1,833,711	+	artQ	LU632_RS09675	0.15	-0.1
1,833,746	-	artQ	LU632_RS09675	0.20	-1.1
1,833,746	-	artQ	LU632_RS09675	0.20	+0.5
1,833,763	+	artQ	LU632_RS09675	0.22	-0.1
1,833,982	-	artQ	LU632_RS09675	0.53	+0.5
1,834,312	-				-1.3
1,834,354	+				-0.4
1,834,354	+				+0.2
1,834,354	+				-1.8
1,834,355	-				+0.3
1,834,355	-				+1.6
1,834,417	-	artJ	LU632_RS09680	0.12	-2.4
1,834,598	-	artJ	LU632_RS09680	0.36	-0.9
1,834,607	-	artJ	LU632_RS09680	0.38	-1.0