Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09635

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,825,707	+				+0.4
1,825,708	-				+3.5
1,825,717	+				-0.8
1,825,717	+				-0.5
1,825,871	+	nfsA	LU632_RS09630	0.21	+0.4
1,825,926	+	nfsA	LU632_RS09630	0.28	-0.3
1,825,927	-	nfsA	LU632_RS09630	0.28	-0.2
1,825,927	-	nfsA	LU632_RS09630	0.28	-1.8
1,826,316	+	nfsA	LU632_RS09630	0.82	-0.6
1,826,320	-	nfsA	LU632_RS09630	0.83	+3.0
1,826,381	+				+1.2
1,826,385	-				+0.6
1,826,403	-				+0.5
1,826,413	-				+1.2
1,826,462	+				-0.9
1,826,462	+				+1.8
1,826,463	-				+0.1
1,826,463	-				-0.2
1,826,463	-				-1.0
1,826,554	-				+0.5
1,826,555	+				-0.1
1,826,556	-				-1.5
1,826,582	-				-0.8
1,826,585	+				+0.2
1,826,585	+				+0.5
1,826,586	-				-1.1
1,826,586	-				+0.9
1,826,605	+				-0.6
1,826,626	+				-1.1
1,826,627	-				-0.7
1,826,627	-				-0.6
1,826,627	-				-0.2
1,826,822	+		LU632_RS09635	0.33	-2.5
1,826,823	-		LU632_RS09635	0.34	-1.8
1,826,823	-		LU632_RS09635	0.34	-0.4
1,827,046	-		LU632_RS09635	0.80	-0.1
1,827,190	-				-2.3
1,827,212	-				-0.3
1,827,213	+				+1.0
1,827,213	+				+0.4
1,827,570	+		LU632_RS09640	0.30	-3.0
1,827,750	-		LU632_RS09640	0.68	-3.0
1,827,750	-		LU632_RS09640	0.68	-0.0
1,827,836	+		LU632_RS09640	0.86	+1.2
1,828,079	-				-0.7
1,828,079	-				+1.7
1,828,127	+				-2.1