Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09175

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,728,233	+	yvcK	LU632_RS09165	0.33	+0.4
1,728,234	-	yvcK	LU632_RS09165	0.33	-0.9
1,728,258	-	yvcK	LU632_RS09165	0.36	+1.6
1,728,259	+	yvcK	LU632_RS09165	0.36	-0.3
1,728,414	-	yvcK	LU632_RS09165	0.53	-0.1
1,728,537	+	yvcK	LU632_RS09165	0.67	+0.8
1,728,557	+	yvcK	LU632_RS09165	0.69	+2.6
1,728,557	+	yvcK	LU632_RS09165	0.69	-0.1
1,728,558	-	yvcK	LU632_RS09165	0.69	-1.0
1,728,558	-	yvcK	LU632_RS09165	0.69	+1.0
1,728,689	+	yvcK	LU632_RS09165	0.83	-0.7
1,728,689	+	yvcK	LU632_RS09165	0.83	-0.4
1,728,747	+	yvcK	LU632_RS09165	0.90	+0.6
1,728,748	-	yvcK	LU632_RS09165	0.90	+1.6
1,728,840	-				-1.1
1,728,845	+				+0.2
1,728,845	+				-1.2
1,728,845	+				+0.7
1,728,845	+				+0.3
1,728,845	+				+0.5
1,728,845	+				+0.7
1,728,846	-				+0.4
1,728,846	-				+0.1
1,728,846	-				-1.7
1,728,846	-				-1.4
1,728,847	+				-0.0
1,728,895	-				-1.6
1,728,895	-				-0.6
1,728,940	+		LU632_RS09170	0.13	-1.4
1,728,991	+		LU632_RS09170	0.46	+0.3
1,728,994	+		LU632_RS09170	0.48	-1.4
1,728,995	-		LU632_RS09170	0.49	-0.1
1,728,995	-		LU632_RS09170	0.49	-1.6
1,729,098	-				-0.4
1,729,143	+				-0.4
1,729,150	-				-0.2
1,729,168	+				+1.3
1,729,169	-				+0.5
1,729,169	-				+1.3
1,729,171	+				-0.5
1,729,600	-	moaA	LU632_RS09175	0.48	+1.2
1,729,632	+	moaA	LU632_RS09175	0.51	+0.2
1,729,632	+	moaA	LU632_RS09175	0.51	+1.0
1,729,632	+	moaA	LU632_RS09175	0.51	+1.1
1,729,632	+	moaA	LU632_RS09175	0.51	+0.1
1,729,632	+	moaA	LU632_RS09175	0.51	-1.3
1,729,632	+	moaA	LU632_RS09175	0.51	+1.7
1,729,653	+	moaA	LU632_RS09175	0.53	-1.5
1,729,654	-	moaA	LU632_RS09175	0.53	-1.6
1,729,698	+	moaA	LU632_RS09175	0.57	+0.5
1,729,985	+	moaA	LU632_RS09175	0.86	+0.2
1,730,123	-				+1.0
1,730,123	-				+0.4
1,730,159	+				+0.6
1,730,172	-				+1.9
1,730,217	-	moaB	LU632_RS09180	0.16	-1.6
1,730,410	+	moaB	LU632_RS09180	0.53	+0.6
1,730,431	+	moaB	LU632_RS09180	0.57	-1.0
1,730,431	+	moaB	LU632_RS09180	0.57	-1.0
1,730,431	+	moaB	LU632_RS09180	0.57	-0.2
1,730,432	-	moaB	LU632_RS09180	0.57	+0.5
1,730,432	-	moaB	LU632_RS09180	0.57	+0.6
1,730,432	-	moaB	LU632_RS09180	0.57	-1.4
1,730,432	-	moaB	LU632_RS09180	0.57	-0.7
1,730,553	-	moaB	LU632_RS09180	0.81	-0.9
1,730,697	-				-1.0
1,730,697	-				+2.5
1,730,890	+	moaC	LU632_RS09185	0.48	+0.0
1,731,033	+	moaC	LU632_RS09185	0.78	+0.3
1,731,033	+	moaC	LU632_RS09185	0.78	-0.4
1,731,034	-	moaC	LU632_RS09185	0.78	-1.0
1,731,038	+	moaC	LU632_RS09185	0.79	+0.1
1,731,039	-	moaC	LU632_RS09185	0.79	-2.0
1,731,039	-	moaC	LU632_RS09185	0.79	-0.7
1,731,039	-	moaC	LU632_RS09185	0.79	-1.1
1,731,039	-	moaC	LU632_RS09185	0.79	-0.4
1,731,093	-				+0.0