Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08795

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,653,616	-		LU632_RS08790	0.24	-1.8
1,653,616	-		LU632_RS08790	0.24	-1.5
1,653,620	-		LU632_RS08790	0.24	-5.1
1,653,650	-		LU632_RS08790	0.27	-3.4
1,653,714	+		LU632_RS08790	0.33	-5.4
1,653,736	-		LU632_RS08790	0.35	-1.9
1,653,779	-		LU632_RS08790	0.39	-1.2
1,653,962	+		LU632_RS08790	0.55	-2.1
1,654,144	+		LU632_RS08790	0.71	-2.2
1,654,184	-		LU632_RS08790	0.74	-2.8
1,654,303	-		LU632_RS08790	0.85	-4.4
1,654,307	-		LU632_RS08790	0.85	-4.2
1,654,392	-				-2.1
1,654,395	-				-2.0
1,654,404	-				-3.5
1,654,405	+				-1.4
1,654,411	+				-4.1
1,654,411	+				-4.1
1,654,412	-				-2.3
1,654,413	+				-0.9
1,654,414	-				-4.0
1,654,581	+				-3.2
1,654,581	+				-3.2
1,654,581	+				-1.4
1,654,582	-				-1.9
1,654,582	-				-1.4
1,654,649	+		LU632_RS08795	0.15	-2.6
1,654,649	+		LU632_RS08795	0.15	-0.8
1,654,649	+		LU632_RS08795	0.15	-1.5
1,654,649	+		LU632_RS08795	0.15	-1.4
1,654,649	+		LU632_RS08795	0.15	-2.7
1,654,650	-		LU632_RS08795	0.15	-1.2
1,654,650	-		LU632_RS08795	0.15	-1.7
1,654,650	-		LU632_RS08795	0.15	-1.6
1,654,650	-		LU632_RS08795	0.15	-0.7
1,654,650	-		LU632_RS08795	0.15	-1.7
1,654,650	-		LU632_RS08795	0.15	-0.6
1,654,650	-		LU632_RS08795	0.15	-0.4
1,654,650	-		LU632_RS08795	0.15	-2.6
1,654,650	-		LU632_RS08795	0.15	-0.7
1,654,650	-		LU632_RS08795	0.15	+0.1
1,654,651	+		LU632_RS08795	0.15	-2.7
1,654,651	+		LU632_RS08795	0.15	-2.2
1,654,651	+		LU632_RS08795	0.15	-0.9
1,654,651	+		LU632_RS08795	0.15	-3.1
1,654,651	+		LU632_RS08795	0.15	-0.4
1,654,652	-		LU632_RS08795	0.15	-1.9
1,654,652	-		LU632_RS08795	0.15	-1.2
1,654,654	-		LU632_RS08795	0.15	-1.7
1,654,654	-		LU632_RS08795	0.15	-2.0
1,654,654	-		LU632_RS08795	0.15	-0.7
1,654,781	-		LU632_RS08795	0.32	-1.3
1,654,781	-		LU632_RS08795	0.32	-0.9
1,655,005	+		LU632_RS08795	0.62	-2.7
1,655,363	+				-0.1
1,655,444	-				-2.5
1,655,449	+				-1.8
1,655,896	+		LU632_RS08800	0.47	-1.4
1,656,003	-		LU632_RS08800	0.57	+0.0
1,656,127	-		LU632_RS08800	0.69	-2.6
1,656,137	-		LU632_RS08800	0.70	-4.0
1,656,137	-		LU632_RS08800	0.70	-0.4