Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08765

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,646,128	-				+1.7
1,646,402	+				+6.5
1,646,406	+				+5.5
1,646,406	+				+4.7
1,646,411	+				+3.5
1,646,427	-				+5.0
1,646,465	-				+4.5
1,646,472	+				+1.5
1,646,472	+				-1.6
1,646,536	+				-1.2
1,646,613	-				+2.9
1,646,646	-				+4.8
1,646,751	-				+3.0
1,646,751	-				+5.0
1,646,773	+				+0.9
1,646,978	-	wbaP	LU632_RS08765	0.12	+4.8
1,646,987	-	wbaP	LU632_RS08765	0.12	+4.2
1,646,990	-	wbaP	LU632_RS08765	0.13	+1.7
1,647,039	-	wbaP	LU632_RS08765	0.16	+6.3
1,647,040	+	wbaP	LU632_RS08765	0.16	+5.9
1,647,227	-	wbaP	LU632_RS08765	0.29	+3.8
1,647,379	-	wbaP	LU632_RS08765	0.40	+3.8
1,647,414	+	wbaP	LU632_RS08765	0.42	+3.4
1,647,436	+	wbaP	LU632_RS08765	0.44	+2.0
1,647,444	+	wbaP	LU632_RS08765	0.44	+6.0
1,647,445	-	wbaP	LU632_RS08765	0.44	+6.3
1,647,535	-	wbaP	LU632_RS08765	0.51	+7.0
1,647,559	-	wbaP	LU632_RS08765	0.52	+5.0
1,647,559	-	wbaP	LU632_RS08765	0.52	+1.5
1,647,579	-	wbaP	LU632_RS08765	0.54	+3.4
1,647,697	+	wbaP	LU632_RS08765	0.62	+4.0
1,647,698	-	wbaP	LU632_RS08765	0.62	+3.0
1,647,718	+	wbaP	LU632_RS08765	0.63	+2.1
1,647,718	+	wbaP	LU632_RS08765	0.63	+4.0
1,647,788	-	wbaP	LU632_RS08765	0.68	+3.2
1,648,022	-	wbaP	LU632_RS08765	0.85	+4.5
1,648,022	-	wbaP	LU632_RS08765	0.85	+4.3
1,648,062	-	wbaP	LU632_RS08765	0.87	+3.0
1,648,064	+	wbaP	LU632_RS08765	0.87	+3.2
1,648,065	-	wbaP	LU632_RS08765	0.88	+0.7
1,648,067	+	wbaP	LU632_RS08765	0.88	+3.2
1,648,067	+	wbaP	LU632_RS08765	0.88	+3.9
1,648,067	+	wbaP	LU632_RS08765	0.88	+5.3
1,648,067	+	wbaP	LU632_RS08765	0.88	+4.5
1,648,067	+	wbaP	LU632_RS08765	0.88	+2.6
1,648,067	+	wbaP	LU632_RS08765	0.88	+3.8
1,648,067	+	wbaP	LU632_RS08765	0.88	+4.7
1,648,067	+	wbaP	LU632_RS08765	0.88	+5.3
1,648,068	-	wbaP	LU632_RS08765	0.88	+2.5
1,648,068	-	wbaP	LU632_RS08765	0.88	+5.7
1,648,068	-	wbaP	LU632_RS08765	0.88	+7.8
1,648,069	+	wbaP	LU632_RS08765	0.88	+2.7
1,648,069	+	wbaP	LU632_RS08765	0.88	+5.8
1,648,143	-				+6.5
1,648,162	-				+8.1
1,648,288	-				+2.3
1,648,303	+				+0.9
1,648,304	-				-2.5
1,648,308	+				+2.0
1,648,308	+				-0.7
1,648,340	+				+1.3
1,648,341	-				+0.7
1,648,341	-				-1.1
1,648,395	-				+0.5
1,648,396	+				+0.1
1,648,396	+				+2.0
1,648,396	+				-0.4
1,648,396	+				-0.1
1,648,397	-				-3.0
1,648,407	+				-1.0
1,648,408	-				-1.9
1,648,411	+				+0.7
1,648,411	+				-0.1
1,648,414	+				+2.4
1,648,414	+				+2.3
1,648,414	+				+0.7
1,648,441	+				-1.9
1,648,458	-				-2.7
1,648,492	-				-1.4
1,648,517	-				-4.6
1,648,542	+				-3.2
1,648,549	+				-3.9
1,648,549	+				-2.5
1,648,556	-				-5.4
1,648,651	+		LU632_RS08770	0.12	-3.5
1,648,656	-		LU632_RS08770	0.13	-1.6
1,648,656	-		LU632_RS08770	0.13	-0.3
1,648,717	-		LU632_RS08770	0.18	-0.9
1,648,749	+		LU632_RS08770	0.21	-2.5
1,648,750	-		LU632_RS08770	0.21	-2.1
1,648,862	-		LU632_RS08770	0.31	-3.3
1,648,885	+		LU632_RS08770	0.33	-4.0
1,648,886	-		LU632_RS08770	0.33	-0.3
1,648,899	-		LU632_RS08770	0.34	-1.6
1,648,975	+		LU632_RS08770	0.41	-4.9
1,648,976	-		LU632_RS08770	0.41	-2.5
1,648,992	+		LU632_RS08770	0.42	-0.9
1,648,998	+		LU632_RS08770	0.43	-3.2
1,648,999	-		LU632_RS08770	0.43	-4.1
1,648,999	-		LU632_RS08770	0.43	-1.5
1,649,014	+		LU632_RS08770	0.44	-0.6
1,649,014	+		LU632_RS08770	0.44	-0.1
1,649,050	+		LU632_RS08770	0.48	-0.9
1,649,050	+		LU632_RS08770	0.48	-1.1
1,649,234	+		LU632_RS08770	0.64	-4.4