Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08750

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,642,019	+	udk	LU632_RS08740	0.69	-0.3
1,642,121	+	udk	LU632_RS08740	0.85	-0.8
1,642,121	+	udk	LU632_RS08740	0.85	+0.2
1,642,128	+	udk	LU632_RS08740	0.86	+2.5
1,642,128	+	udk	LU632_RS08740	0.86	-2.2
1,642,139	+	udk	LU632_RS08740	0.88	-0.5
1,642,139	+	udk	LU632_RS08740	0.88	+1.3
1,642,236	+				+0.1
1,642,979	-				+3.3
1,643,066	+				+0.3
1,643,068	+				+0.4
1,643,068	+				-0.3
1,643,068	+				-2.2
1,643,069	-				-0.6
1,643,219	-	asmA	LU632_RS08750	0.14	+1.7
1,643,231	-	asmA	LU632_RS08750	0.15	-2.4
1,643,231	-	asmA	LU632_RS08750	0.15	-1.9
1,643,233	+	asmA	LU632_RS08750	0.15	+0.1
1,643,269	-	asmA	LU632_RS08750	0.17	-1.0
1,643,306	-	asmA	LU632_RS08750	0.19	-1.9
1,643,356	+	asmA	LU632_RS08750	0.22	-2.2
1,643,359	+	asmA	LU632_RS08750	0.22	-0.5
1,643,359	+	asmA	LU632_RS08750	0.22	-0.7
1,643,447	-	asmA	LU632_RS08750	0.27	+0.7
1,643,447	-	asmA	LU632_RS08750	0.27	+0.7
1,643,460	+	asmA	LU632_RS08750	0.27	-0.3
1,643,461	-	asmA	LU632_RS08750	0.27	-2.1
1,643,461	-	asmA	LU632_RS08750	0.27	-1.8
1,643,605	+	asmA	LU632_RS08750	0.35	-1.1
1,643,606	-	asmA	LU632_RS08750	0.35	-0.6
1,643,606	-	asmA	LU632_RS08750	0.35	-1.0
1,643,606	-	asmA	LU632_RS08750	0.35	+0.7
1,643,606	-	asmA	LU632_RS08750	0.35	-0.3
1,643,606	-	asmA	LU632_RS08750	0.35	-1.8
1,643,607	+	asmA	LU632_RS08750	0.35	-0.3
1,643,608	-	asmA	LU632_RS08750	0.35	-2.3
1,643,830	-	asmA	LU632_RS08750	0.48	+1.7
1,643,830	-	asmA	LU632_RS08750	0.48	-0.6
1,643,833	+	asmA	LU632_RS08750	0.48	-1.5
1,643,837	-	asmA	LU632_RS08750	0.48	-0.4
1,643,921	-	asmA	LU632_RS08750	0.53	-2.1
1,643,998	+	asmA	LU632_RS08750	0.57	-3.0
1,644,066	+	asmA	LU632_RS08750	0.61	-1.8
1,644,072	+	asmA	LU632_RS08750	0.61	-2.2
1,644,073	-	asmA	LU632_RS08750	0.61	+1.1
1,644,081	+	asmA	LU632_RS08750	0.62	-1.0
1,644,082	-	asmA	LU632_RS08750	0.62	+0.1
1,644,082	-	asmA	LU632_RS08750	0.62	-0.5
1,644,236	-	asmA	LU632_RS08750	0.70	-2.5
1,644,236	-	asmA	LU632_RS08750	0.70	-2.5
1,644,389	-	asmA	LU632_RS08750	0.79	-1.9
1,644,439	+	asmA	LU632_RS08750	0.82	-0.9
1,644,439	+	asmA	LU632_RS08750	0.82	-1.3
1,644,440	-	asmA	LU632_RS08750	0.82	+0.1
1,644,487	+	asmA	LU632_RS08750	0.84	+0.5
1,644,516	-	asmA	LU632_RS08750	0.86	-1.8
1,644,621	+				-1.9
1,644,646	+				-3.7
1,644,650	+				-3.5
1,644,650	+				-2.0
1,644,651	-				-1.0
1,644,651	-				-1.3
1,644,684	+				+0.7
1,644,685	-				+0.9
1,644,685	-				-0.3
1,644,775	+				+1.2
1,644,776	-				-0.6
1,644,776	-				+0.5
1,644,776	-				-0.6
1,644,894	+				+0.3
1,644,894	+				+0.6
1,644,895	-				-1.9
1,644,895	-				+0.8
1,644,952	-		LU632_RS08755	0.20	-0.1
1,645,016	+		LU632_RS08755	0.36	+0.7
1,645,016	+		LU632_RS08755	0.36	-0.6
1,645,017	-		LU632_RS08755	0.37	+1.0
1,645,017	-		LU632_RS08755	0.37	-1.0
1,645,017	-		LU632_RS08755	0.37	-0.5
1,645,017	-		LU632_RS08755	0.37	-0.4
1,645,017	-		LU632_RS08755	0.37	+0.5
1,645,017	-		LU632_RS08755	0.37	-0.8
1,645,024	-		LU632_RS08755	0.38	+1.1
1,645,079	+		LU632_RS08755	0.53	+0.0
1,645,080	-		LU632_RS08755	0.53	-0.3
1,645,080	-		LU632_RS08755	0.53	+0.7
1,645,080	-		LU632_RS08755	0.53	-0.1
1,645,088	+		LU632_RS08755	0.55	-0.1
1,645,088	+		LU632_RS08755	0.55	-1.5
1,645,089	-		LU632_RS08755	0.55	+0.4
1,645,223	-				-1.6
1,645,282	+				+0.3
1,645,282	+				+1.6
1,645,285	+				+1.0
1,645,286	-				-0.2
1,645,289	+				+0.9
1,645,300	+				+0.8
1,645,301	-				+1.7
1,645,301	-				+0.1