Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08745

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,641,351	-				-1.0
1,641,398	+				+1.0
1,641,398	+				-0.2
1,641,399	-				-1.2
1,641,426	+				-2.5
1,641,447	+				+1.4
1,641,447	+				-0.3
1,641,448	-				-0.4
1,641,483	+				+1.4
1,641,572	+				+0.2
1,641,581	+				-0.6
1,641,581	+				+0.9
1,641,604	+				-1.0
1,641,604	+				-0.9
1,641,608	+				-0.0
1,641,608	+				-0.2
1,641,717	+	udk	LU632_RS08740	0.22	+0.7
1,641,720	+	udk	LU632_RS08740	0.23	-0.3
1,641,764	+	udk	LU632_RS08740	0.30	+1.7
1,641,855	+	udk	LU632_RS08740	0.44	+1.0
1,641,855	+	udk	LU632_RS08740	0.44	+0.4
1,641,855	+	udk	LU632_RS08740	0.44	-0.5
1,641,855	+	udk	LU632_RS08740	0.44	+1.4
1,642,019	+	udk	LU632_RS08740	0.69	-0.3
1,642,121	+	udk	LU632_RS08740	0.85	-0.8
1,642,121	+	udk	LU632_RS08740	0.85	+0.2
1,642,128	+	udk	LU632_RS08740	0.86	+2.5
1,642,128	+	udk	LU632_RS08740	0.86	-2.2
1,642,139	+	udk	LU632_RS08740	0.88	-0.5
1,642,139	+	udk	LU632_RS08740	0.88	+1.3
1,642,236	+				+0.1
1,642,979	-				+3.3
1,643,066	+				+0.3
1,643,068	+				+0.4
1,643,068	+				-0.3
1,643,068	+				-2.2
1,643,069	-				-0.6
1,643,219	-	asmA	LU632_RS08750	0.14	+1.7
1,643,231	-	asmA	LU632_RS08750	0.15	-2.4
1,643,231	-	asmA	LU632_RS08750	0.15	-1.9
1,643,233	+	asmA	LU632_RS08750	0.15	+0.1
1,643,269	-	asmA	LU632_RS08750	0.17	-1.0
1,643,306	-	asmA	LU632_RS08750	0.19	-1.9
1,643,356	+	asmA	LU632_RS08750	0.22	-2.2
1,643,359	+	asmA	LU632_RS08750	0.22	-0.5
1,643,359	+	asmA	LU632_RS08750	0.22	-0.7
1,643,447	-	asmA	LU632_RS08750	0.27	+0.7
1,643,447	-	asmA	LU632_RS08750	0.27	+0.7
1,643,460	+	asmA	LU632_RS08750	0.27	-0.3
1,643,461	-	asmA	LU632_RS08750	0.27	-2.1
1,643,461	-	asmA	LU632_RS08750	0.27	-1.8
1,643,605	+	asmA	LU632_RS08750	0.35	-1.1
1,643,606	-	asmA	LU632_RS08750	0.35	-0.6
1,643,606	-	asmA	LU632_RS08750	0.35	-1.0
1,643,606	-	asmA	LU632_RS08750	0.35	+0.7
1,643,606	-	asmA	LU632_RS08750	0.35	-0.3
1,643,606	-	asmA	LU632_RS08750	0.35	-1.8
1,643,607	+	asmA	LU632_RS08750	0.35	-0.3
1,643,608	-	asmA	LU632_RS08750	0.35	-2.3
1,643,830	-	asmA	LU632_RS08750	0.48	+1.7
1,643,830	-	asmA	LU632_RS08750	0.48	-0.6
1,643,833	+	asmA	LU632_RS08750	0.48	-1.5
1,643,837	-	asmA	LU632_RS08750	0.48	-0.4