Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08590

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,612,557	+				+1.2
1,612,635	+		LU632_RS08580	0.50	-0.9
1,612,636	-		LU632_RS08580	0.50	-0.9
1,612,691	-		LU632_RS08580	0.85	+0.4
1,613,007	-		LU632_RS08585	0.43	+1.2
1,613,046	+		LU632_RS08585	0.49	-1.5
1,613,357	+				-0.8
1,613,372	+				-0.1
1,613,372	+				-0.7
1,613,372	+				+0.4
1,613,418	-				+0.6
1,613,418	-				+0.7
1,613,480	-				+0.2
1,614,076	-	thiD	LU632_RS08590	0.76	-0.8
1,614,165	+	thiD	LU632_RS08590	0.87	+1.9
1,614,166	-	thiD	LU632_RS08590	0.87	-0.7
1,614,166	-	thiD	LU632_RS08590	0.87	-0.6
1,614,681	+				-0.1
1,614,682	-				-0.5
1,614,797	+				-0.6
1,614,797	+				+0.5
1,614,797	+				-0.9
1,614,798	-				-1.3
1,614,798	-				-2.4
1,614,863	+		LU632_RS08605	0.34	+1.1
1,614,864	-		LU632_RS08605	0.35	+0.1
1,614,898	+		LU632_RS08605	0.58	+0.6
1,614,898	+		LU632_RS08605	0.58	+1.0
1,614,943	-		LU632_RS08605	0.88	-0.8
1,615,024	-				-0.3
1,615,024	-				+0.7
1,615,033	-				+2.0
1,615,072	+				+1.0
1,615,185	-				-0.3
1,615,249	+		LU632_RS08610	0.18	-0.4
1,615,250	-		LU632_RS08610	0.19	+0.8
1,615,250	-		LU632_RS08610	0.19	+0.7
1,615,250	-		LU632_RS08610	0.19	-0.7
1,615,250	-		LU632_RS08610	0.19	-0.5