Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08565

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,607,754	+	cdd	LU632_RS08555	0.89	-1.2
1,607,754	+	cdd	LU632_RS08555	0.89	-1.3
1,607,755	-	cdd	LU632_RS08555	0.89	+0.2
1,607,760	-	cdd	LU632_RS08555	0.89	-1.1
1,607,760	-	cdd	LU632_RS08555	0.89	-1.6
1,607,760	-	cdd	LU632_RS08555	0.89	-0.4
1,607,941	+				-0.7
1,607,996	+				+7.4
1,608,035	-				+0.7
1,608,035	-				+1.1
1,608,051	-		LU632_RS08560	0.10	-0.3
1,608,069	+		LU632_RS08560	0.13	+0.6
1,608,069	+		LU632_RS08560	0.13	+0.9
1,608,187	+		LU632_RS08560	0.30	+0.4
1,608,187	+		LU632_RS08560	0.30	-0.9
1,608,187	+		LU632_RS08560	0.30	-0.1
1,608,187	+		LU632_RS08560	0.30	-0.6
1,608,188	-		LU632_RS08560	0.30	+0.0
1,608,188	-		LU632_RS08560	0.30	-1.8
1,608,188	-		LU632_RS08560	0.30	+1.4
1,608,188	-		LU632_RS08560	0.30	+0.7
1,608,188	-		LU632_RS08560	0.30	-0.3
1,608,188	-		LU632_RS08560	0.30	+0.9
1,608,221	+		LU632_RS08560	0.35	+1.0
1,608,222	-		LU632_RS08560	0.35	-0.2
1,608,222	-		LU632_RS08560	0.35	-0.6
1,608,483	-		LU632_RS08560	0.72	+0.0
1,608,523	-		LU632_RS08560	0.78	-1.0
1,608,529	+		LU632_RS08560	0.79	-0.4
1,608,529	+		LU632_RS08560	0.79	+1.0
1,608,529	+		LU632_RS08560	0.79	+0.3
1,608,530	-		LU632_RS08560	0.79	-0.3
1,608,554	-		LU632_RS08560	0.83	-0.6
1,608,616	+				-0.8
1,608,617	-				+0.8
1,608,617	-				-0.0
1,608,741	+		LU632_RS08565	0.19	+0.1
1,608,854	-		LU632_RS08565	0.47	-0.0
1,608,854	-		LU632_RS08565	0.47	+0.4
1,608,854	-		LU632_RS08565	0.47	+0.7
1,608,934	-		LU632_RS08565	0.68	-0.0
1,608,934	-		LU632_RS08565	0.68	+0.3
1,609,010	+		LU632_RS08565	0.87	+1.6
1,609,010	+		LU632_RS08565	0.87	-1.0
1,609,011	-		LU632_RS08565	0.87	-1.8
1,609,030	+				+0.6
1,609,094	-				-2.6
1,609,119	+				+0.3
1,609,125	+				+0.1
1,609,125	+				-0.3
1,609,126	-				-0.8
1,609,212	+				+0.7
1,609,213	-				-0.9
1,609,505	-	metG	LU632_RS08570	0.14	-0.5
1,609,509	-	metG	LU632_RS08570	0.15	-1.2