Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07615

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS07610 and LU632_RS07615 overlap by 1 nucleotidesLU632_RS07615 and LU632_RS07620 overlap by 4 nucleotidesLU632_RS07620 and LU632_RS07625 overlap by 1 nucleotidesLU632_RS07625 and LU632_RS07630 overlap by 8 nucleotides LU632_RS07610: LU632_RS07610 - DUF935 domain-containing protein, at 1,427,786 to 1,429,282 _RS07610 LU632_RS07615: LU632_RS07615 - hypothetical protein, at 1,429,282 to 1,430,805 _RS07615 LU632_RS07620: LU632_RS07620 - DUF3486 family protein, at 1,430,802 to 1,431,347 _RS07620 LU632_RS07625: LU632_RS07625 - hypothetical protein, at 1,431,347 to 1,431,658 _RS07625 LU632_RS07630: LU632_RS07630 - hypothetical protein, at 1,431,651 to 1,431,983 _RS07630 Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1428.442 kb on + strand, within LU632_RS07610at 1428.457 kb on - strand, within LU632_RS07610at 1428.460 kb on + strand, within LU632_RS07610at 1428.694 kb on + strand, within LU632_RS07610at 1428.757 kb on + strand, within LU632_RS07610at 1428.880 kb on + strand, within LU632_RS07610at 1429.107 kb on + strand, within LU632_RS07610at 1429.107 kb on + strand, within LU632_RS07610at 1429.142 kb on - strandat 1429.161 kb on + strandat 1429.161 kb on + strandat 1429.161 kb on + strandat 1429.162 kb on - strandat 1429.371 kb on - strandat 1429.561 kb on - strand, within LU632_RS07615at 1429.632 kb on + strand, within LU632_RS07615at 1429.732 kb on - strand, within LU632_RS07615at 1429.738 kb on + strand, within LU632_RS07615at 1430.250 kb on + strand, within LU632_RS07615at 1430.284 kb on - strand, within LU632_RS07615at 1430.460 kb on - strand, within LU632_RS07615at 1430.588 kb on + strand, within LU632_RS07615at 1430.597 kb on + strand, within LU632_RS07615at 1430.597 kb on + strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.598 kb on - strand, within LU632_RS07615at 1430.601 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.641 kb on - strand, within LU632_RS07615at 1430.715 kb on + strandat 1430.715 kb on + strandat 1430.716 kb on - strandat 1430.716 kb on - strandat 1430.723 kb on - strandat 1430.783 kb on - strandat 1430.785 kb on + strandat 1430.785 kb on + strandat 1431.223 kb on + strand, within LU632_RS07620at 1431.327 kb on + strandat 1431.328 kb on - strandat 1431.328 kb on - strandat 1431.400 kb on + strand, within LU632_RS07625at 1431.401 kb on - strand, within LU632_RS07625at 1431.401 kb on - strand, within LU632_RS07625at 1431.403 kb on - strand, within LU632_RS07625at 1431.495 kb on + strand, within LU632_RS07625at 1431.582 kb on + strand, within LU632_RS07625at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.706 kb on + strand, within LU632_RS07630at 1431.707 kb on - strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.751 kb on + strand, within LU632_RS07630at 1431.769 kb on + strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630at 1431.770 kb on - strand, within LU632_RS07630

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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1,428,442 + LU632_RS07610 0.44 -0.1
1,428,457 - LU632_RS07610 0.45 +0.7
1,428,460 + LU632_RS07610 0.45 +1.1
1,428,694 + LU632_RS07610 0.61 +1.0
1,428,757 + LU632_RS07610 0.65 -1.5
1,428,880 + LU632_RS07610 0.73 +0.2
1,429,107 + LU632_RS07610 0.88 -1.6
1,429,107 + LU632_RS07610 0.88 +0.8
1,429,142 - +0.4
1,429,161 + -1.0
1,429,161 + -2.0
1,429,161 + -1.7
1,429,162 - +0.6
1,429,371 - +0.0
1,429,561 - LU632_RS07615 0.18 +1.4
1,429,632 + LU632_RS07615 0.23 +0.1
1,429,732 - LU632_RS07615 0.30 +0.0
1,429,738 + LU632_RS07615 0.30 -0.7
1,430,250 + LU632_RS07615 0.64 +0.4
1,430,284 - LU632_RS07615 0.66 -2.3
1,430,460 - LU632_RS07615 0.77 -0.4
1,430,588 + LU632_RS07615 0.86 -0.4
1,430,597 + LU632_RS07615 0.86 +1.2
1,430,597 + LU632_RS07615 0.86 +3.2
1,430,598 - LU632_RS07615 0.86 +0.7
1,430,598 - LU632_RS07615 0.86 -0.7
1,430,598 - LU632_RS07615 0.86 +1.1
1,430,598 - LU632_RS07615 0.86 +1.5
1,430,601 - LU632_RS07615 0.87 -0.5
1,430,641 - LU632_RS07615 0.89 +1.0
1,430,641 - LU632_RS07615 0.89 +1.6
1,430,641 - LU632_RS07615 0.89 +0.4
1,430,715 + -0.2
1,430,715 + -0.5
1,430,716 - -0.2
1,430,716 - +0.3
1,430,723 - -0.7
1,430,783 - +0.6
1,430,785 + -1.0
1,430,785 + -0.2
1,431,223 + LU632_RS07620 0.77 +1.6
1,431,327 + +0.4
1,431,328 - +2.7
1,431,328 - -0.4
1,431,400 + LU632_RS07625 0.17 -1.6
1,431,401 - LU632_RS07625 0.17 +1.6
1,431,401 - LU632_RS07625 0.17 -1.2
1,431,403 - LU632_RS07625 0.18 -0.2
1,431,495 + LU632_RS07625 0.47 +1.9
1,431,582 + LU632_RS07625 0.75 +2.6
1,431,706 + LU632_RS07630 0.17 +0.0
1,431,706 + LU632_RS07630 0.17 +0.6
1,431,706 + LU632_RS07630 0.17 +0.6
1,431,707 - LU632_RS07630 0.17 +0.7
1,431,751 + LU632_RS07630 0.30 -1.0
1,431,751 + LU632_RS07630 0.30 -0.1
1,431,769 + LU632_RS07630 0.35 +0.2
1,431,770 - LU632_RS07630 0.36 -0.4
1,431,770 - LU632_RS07630 0.36 +0.4

Or see this region's nucleotide sequence