Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS07215

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,365,744	-				+0.7
1,365,755	-				+1.0
1,365,766	-				+0.1
1,365,768	+				-1.0
1,365,769	-				+0.7
1,365,769	-				+0.0
1,365,783	+				+1.1
1,365,836	-				-1.9
1,365,903	+				+0.1
1,365,904	-				-1.3
1,365,944	+				-1.0
1,365,944	+				+0.8
1,365,960	-				+0.4
1,365,976	+		LU632_RS07205	0.11	+0.7
1,365,977	-		LU632_RS07205	0.11	+1.7
1,365,983	-		LU632_RS07205	0.14	-0.2
1,365,995	-		LU632_RS07205	0.21	+1.1
1,365,995	-		LU632_RS07205	0.21	-1.2
1,366,058	-		LU632_RS07205	0.53	-1.3
1,366,058	-		LU632_RS07205	0.53	-2.3
1,366,058	-		LU632_RS07205	0.53	+1.2
1,366,058	-		LU632_RS07205	0.53	-0.0
1,366,085	+		LU632_RS07205	0.67	-0.8
1,366,128	+		LU632_RS07205	0.89	+0.7
1,366,128	+		LU632_RS07205	0.89	-1.5
1,366,129	-		LU632_RS07205	0.89	-2.2
1,366,129	-		LU632_RS07205	0.89	+0.2
1,366,132	-				+0.6
1,366,176	+				+0.5
1,366,396	-		LU632_RS07210	0.67	+1.2
1,366,397	+		LU632_RS07210	0.68	-0.2
1,366,398	-		LU632_RS07210	0.68	-1.9
1,366,398	-		LU632_RS07210	0.68	-1.5
1,366,398	-		LU632_RS07210	0.68	+1.3
1,366,490	-				+0.2
1,366,524	+				-1.2
1,366,542	+				-0.9
1,366,657	+				-1.1
1,366,680	-				-1.2
1,366,961	+		LU632_RS07215	0.50	+0.6
1,366,961	+		LU632_RS07215	0.50	-0.1
1,366,961	+		LU632_RS07215	0.50	-0.7
1,366,965	-		LU632_RS07215	0.51	+0.5
1,367,065	+		LU632_RS07215	0.73	+3.0
1,367,189	-				-0.3
1,367,189	-				-0.5
1,367,358	-		LU632_RS07220	0.41	-0.7
1,367,456	+		LU632_RS07220	0.84	-1.7
1,367,457	-		LU632_RS07220	0.85	-0.1
1,367,481	-				-0.9
1,367,493	+				-0.7
1,367,538	+				+1.1
1,367,539	-				+1.2
1,367,547	+				-1.9
1,367,548	-				-0.2
1,367,570	-				+0.5
1,367,572	+				-0.8
1,367,601	+				+2.3
1,367,602	-				+0.3
1,367,602	-				-1.1
1,367,631	+				+1.2
1,367,632	-				+1.9
1,367,645	-				-1.2
1,367,649	+				-0.7
1,367,653	+				-0.1
1,367,654	-				+0.3
1,367,654	-				+1.4
1,367,924	+		LU632_RS07225	0.36	-0.6
1,367,951	-		LU632_RS07225	0.39	-0.1
1,367,992	-		LU632_RS07225	0.44	-1.7
1,367,992	-		LU632_RS07225	0.44	-2.1
1,368,019	+		LU632_RS07225	0.48	+1.7
1,368,020	-		LU632_RS07225	0.48	+0.7
1,368,020	-		LU632_RS07225	0.48	+0.1
1,368,035	-		LU632_RS07225	0.50	+0.5
1,368,071	+		LU632_RS07225	0.54	-0.3