Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS06940 and LU632_RS06945 overlap by 4 nucleotides LU632_RS06945 and LU632_RS06950 overlap by 8 nucleotides LU632_RS06950 and LU632_RS06955 overlap by 4 nucleotides LU632_RS06955 and LU632_RS06960 are separated by 9 nucleotides LU632_RS06960 and LU632_RS06965 are separated by 20 nucleotides
LU632_RS06940: LU632_RS06940 - class I SAM-dependent methyltransferase, at 1,327,779 to 1,328,258
_RS06940
LU632_RS06945: LU632_RS06945 - hypothetical protein, at 1,328,255 to 1,328,479
_RS06945
LU632_RS06950: LU632_RS06950 - hypothetical protein, at 1,328,472 to 1,329,047
_RS06950
LU632_RS06955: LU632_RS06955 - hypothetical protein, at 1,329,044 to 1,329,625
_RS06955
LU632_RS06960: LU632_RS06960 - hypothetical protein, at 1,329,635 to 1,329,904
_RS06960
LU632_RS06965: LU632_RS06965 - ERF family protein, at 1,329,925 to 1,330,560
_RS06965
Position (kb) 1329
1330 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.153 kb on + strand, within LU632_RS06940 at 1328.154 kb on - strand, within LU632_RS06940 at 1328.178 kb on - strand, within LU632_RS06940 at 1328.298 kb on + strand, within LU632_RS06945 at 1328.357 kb on + strand, within LU632_RS06945 at 1328.418 kb on - strand, within LU632_RS06945 at 1328.759 kb on - strand, within LU632_RS06950 at 1328.885 kb on - strand, within LU632_RS06950 at 1328.911 kb on - strand, within LU632_RS06950 at 1328.960 kb on + strand, within LU632_RS06950 at 1329.109 kb on + strand, within LU632_RS06955 at 1329.233 kb on + strand, within LU632_RS06955 at 1329.343 kb on - strand, within LU632_RS06955 at 1329.899 kb on - strand at 1329.899 kb on - strand at 1329.899 kb on - strand at 1329.899 kb on - strand at 1329.899 kb on - strand at 1330.347 kb on + strand, within LU632_RS06965 at 1330.371 kb on - strand, within LU632_RS06965 at 1330.371 kb on - strand, within LU632_RS06965 at 1330.371 kb on - strand, within LU632_RS06965 at 1330.391 kb on - strand, within LU632_RS06965 at 1330.470 kb on - strand, within LU632_RS06965 at 1330.470 kb on - strand, within LU632_RS06965 at 1330.470 kb on - strand, within LU632_RS06965
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 1,328,153 + LU632_RS06940 0.78 -0.3 1,328,153 + LU632_RS06940 0.78 +0.2 1,328,153 + LU632_RS06940 0.78 -0.0 1,328,154 - LU632_RS06940 0.78 -0.0 1,328,178 - LU632_RS06940 0.83 +1.9 1,328,298 + LU632_RS06945 0.19 -0.7 1,328,357 + LU632_RS06945 0.45 +1.3 1,328,418 - LU632_RS06945 0.72 -0.1 1,328,759 - LU632_RS06950 0.50 -0.1 1,328,885 - LU632_RS06950 0.72 -0.5 1,328,911 - LU632_RS06950 0.76 +0.6 1,328,960 + LU632_RS06950 0.85 +0.8 1,329,109 + LU632_RS06955 0.11 -1.4 1,329,233 + LU632_RS06955 0.32 -0.6 1,329,343 - LU632_RS06955 0.51 -2.2 1,329,899 - +1.8 1,329,899 - -2.1 1,329,899 - +0.4 1,329,899 - -0.9 1,329,899 - -1.2 1,330,347 + LU632_RS06965 0.66 -0.3 1,330,371 - LU632_RS06965 0.70 +2.0 1,330,371 - LU632_RS06965 0.70 -0.7 1,330,371 - LU632_RS06965 0.70 +0.2 1,330,391 - LU632_RS06965 0.73 +0.7 1,330,470 - LU632_RS06965 0.86 -0.7 1,330,470 - LU632_RS06965 0.86 +1.4 1,330,470 - LU632_RS06965 0.86 -0.4
Or see this region's nucleotide sequence