Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06660

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,279,041	-		LU632_RS06655	0.27	-0.7
1,279,077	+		LU632_RS06655	0.30	-0.1
1,279,077	+		LU632_RS06655	0.30	-0.1
1,279,078	-		LU632_RS06655	0.30	+0.4
1,279,078	-		LU632_RS06655	0.30	-2.3
1,279,092	-		LU632_RS06655	0.32	+2.5
1,279,143	+		LU632_RS06655	0.37	+0.0
1,279,144	-		LU632_RS06655	0.37	-2.0
1,279,251	-		LU632_RS06655	0.48	-1.4
1,279,253	+		LU632_RS06655	0.48	+0.3
1,279,313	+		LU632_RS06655	0.54	+1.2
1,279,464	+		LU632_RS06655	0.69	-0.1
1,279,555	+		LU632_RS06655	0.78	-0.7
1,279,556	-		LU632_RS06655	0.78	+0.1
1,279,633	+		LU632_RS06655	0.86	-0.1
1,279,634	-		LU632_RS06655	0.86	-0.2
1,279,634	-		LU632_RS06655	0.86	-2.4
1,279,817	+				-1.2
1,279,818	-				+0.5
1,279,851	+				+1.0
1,279,852	-				-0.7
1,279,873	+				-1.0
1,279,873	+				-2.4
1,279,924	-				+1.3
1,279,924	-				-0.2
1,280,236	-		LU632_RS06660	0.23	+0.5
1,281,117	+				-0.4
1,281,117	+				-0.0
1,281,131	+				+1.5
1,281,172	+				-0.2
1,281,172	+				+0.0
1,281,172	+				-1.9
1,281,275	+		LU632_RS06665	0.25	+0.0
1,281,514	+		LU632_RS06665	0.83	-0.4
1,281,518	+		LU632_RS06665	0.84	-0.6
1,281,518	+		LU632_RS06665	0.84	-1.7
1,281,519	-		LU632_RS06665	0.84	-0.1
1,281,719	-				-0.8
1,281,719	-				-0.4
1,281,725	+				+0.2
1,281,725	+				-1.0
1,281,741	-				+0.1
1,281,781	+				-0.6
1,281,781	+				-1.4
1,281,782	-				-1.2
1,281,782	-				+0.3
1,281,782	-				-0.7
1,281,880	+		LU632_RS06670	0.18	-0.1
1,281,892	+		LU632_RS06670	0.20	-0.8
1,281,893	-		LU632_RS06670	0.20	+0.3
1,281,893	-		LU632_RS06670	0.20	+0.6
1,281,942	-		LU632_RS06670	0.27	-0.7
1,281,968	-		LU632_RS06670	0.31	-0.2
1,282,027	+		LU632_RS06670	0.40	-2.5
1,282,028	-		LU632_RS06670	0.40	-0.6
1,282,028	-		LU632_RS06670	0.40	+1.4