Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06325

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,211,521	-	gudD	LU632_RS06320	0.33	-0.8
1,211,533	-	gudD	LU632_RS06320	0.33	-0.7
1,211,533	-	gudD	LU632_RS06320	0.33	-1.2
1,211,541	+	gudD	LU632_RS06320	0.34	+0.0
1,211,541	+	gudD	LU632_RS06320	0.34	+1.6
1,211,542	-	gudD	LU632_RS06320	0.34	+0.9
1,211,701	+	gudD	LU632_RS06320	0.46	+0.0
1,211,952	-	gudD	LU632_RS06320	0.65	-0.9
1,212,182	+	gudD	LU632_RS06320	0.82	+2.1
1,212,325	-				-2.2
1,212,402	-				-0.4
1,212,449	+				-2.1
1,212,450	-				-1.0
1,212,453	+				-2.6
1,212,453	+				-0.7
1,212,836	+	garL	LU632_RS06325	0.51	-2.4
1,212,837	-	garL	LU632_RS06325	0.51	+0.0
1,212,837	-	garL	LU632_RS06325	0.51	+1.6
1,212,837	-	garL	LU632_RS06325	0.51	-1.4
1,212,885	+	garL	LU632_RS06325	0.57	-0.2
1,212,886	-	garL	LU632_RS06325	0.57	-0.7
1,212,923	-	garL	LU632_RS06325	0.62	-1.8
1,212,923	-	garL	LU632_RS06325	0.62	+2.9
1,213,086	+	garL	LU632_RS06325	0.83	-0.3
1,213,086	+	garL	LU632_RS06325	0.83	+0.2
1,213,087	-	garL	LU632_RS06325	0.84	+1.3
1,213,191	+				+1.1
1,213,415	+	garR	LU632_RS06330	0.20	-1.4
1,213,415	+	garR	LU632_RS06330	0.20	-1.0
1,213,497	-	garR	LU632_RS06330	0.29	+0.0
1,213,506	-	garR	LU632_RS06330	0.31	-1.4
1,213,512	-	garR	LU632_RS06330	0.31	-2.7
1,213,674	+	garR	LU632_RS06330	0.49	-0.3
1,213,734	-	garR	LU632_RS06330	0.56	+1.6
1,213,776	-	garR	LU632_RS06330	0.61	-4.4
1,213,911	-	garR	LU632_RS06330	0.76	-1.0
1,213,911	-	garR	LU632_RS06330	0.76	-0.7
1,213,944	-	garR	LU632_RS06330	0.80	-1.2
1,213,946	+	garR	LU632_RS06330	0.80	+0.3
1,213,947	-	garR	LU632_RS06330	0.80	-1.7
1,214,188	+				-0.7
1,214,188	+				-1.2
1,214,189	-				+0.0
1,214,189	-				-1.6
1,214,189	-				-1.0
1,214,190	+				+0.6
1,214,191	-				-1.2
1,214,191	-				-1.8
1,214,191	-				-1.2