Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06255

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,196,746	-				-1.4
1,197,416	-				-1.8
1,197,454	-				-1.3
1,197,460	-				+1.3
1,197,556	-				-0.3
1,197,599	+				+0.2
1,197,600	-				+2.2
1,197,600	-				-1.2
1,197,600	-				+0.5
1,197,601	+				+1.8
1,197,601	+				-0.9
1,197,602	-				-0.2
1,197,602	-				-1.4
1,197,605	+				-2.4
1,197,605	+				+1.6
1,197,605	+				-1.2
1,197,605	-				+0.6
1,197,606	-				-2.4
1,197,636	-				-0.2
1,197,636	-				-0.4
1,197,660	-				-2.3
1,197,869	+		LU632_RS06255	0.16	+0.1
1,197,869	+		LU632_RS06255	0.16	+0.0
1,197,874	+		LU632_RS06255	0.17	+0.2
1,198,067	+		LU632_RS06255	0.38	-0.7
1,198,169	+		LU632_RS06255	0.49	-1.5
1,198,200	+		LU632_RS06255	0.52	+1.1
1,198,200	+		LU632_RS06255	0.52	-0.5
1,198,223	-		LU632_RS06255	0.55	+0.1
1,198,287	-		LU632_RS06255	0.62	-1.3
1,198,326	+		LU632_RS06255	0.66	+0.4
1,198,326	+		LU632_RS06255	0.66	+1.0
1,198,326	+		LU632_RS06255	0.66	-0.9
1,198,326	+		LU632_RS06255	0.66	+1.0
1,198,327	-		LU632_RS06255	0.66	-0.7
1,198,352	+		LU632_RS06255	0.69	-0.5
1,198,353	-		LU632_RS06255	0.69	-0.8
1,198,356	-		LU632_RS06255	0.69	-1.4
1,198,440	-		LU632_RS06255	0.78	-1.4
1,198,440	-		LU632_RS06255	0.78	+0.5
1,198,440	-		LU632_RS06255	0.78	+0.2
1,198,490	+		LU632_RS06255	0.84	+0.4
1,198,491	-		LU632_RS06255	0.84	-1.0
1,198,491	-		LU632_RS06255	0.84	-1.3
1,198,711	-				-0.0
1,198,775	-		LU632_RS06260	0.22	-1.6
1,198,775	-		LU632_RS06260	0.22	+0.2
1,198,837	+		LU632_RS06260	0.38	-0.2
1,198,872	+		LU632_RS06260	0.46	+0.7
1,198,872	+		LU632_RS06260	0.46	-0.4
1,198,873	-		LU632_RS06260	0.47	-2.0
1,198,873	-		LU632_RS06260	0.47	-2.6
1,198,929	+		LU632_RS06260	0.61	-1.2
1,198,930	-		LU632_RS06260	0.61	-0.4
1,198,950	-		LU632_RS06260	0.66	+0.1
1,199,135	+				+1.0
1,199,196	+	rlmM	LU632_RS06265	0.11	+1.5
1,199,197	-	rlmM	LU632_RS06265	0.11	-0.0
1,199,201	-	rlmM	LU632_RS06265	0.11	-2.2
1,199,201	-	rlmM	LU632_RS06265	0.11	-1.8
1,199,201	-	rlmM	LU632_RS06265	0.11	+3.6
1,199,204	-	rlmM	LU632_RS06265	0.12	+1.2
1,199,204	-	rlmM	LU632_RS06265	0.12	-0.4
1,199,489	+	rlmM	LU632_RS06265	0.38	-0.5
1,199,550	+	rlmM	LU632_RS06265	0.43	+2.1
1,199,577	-	rlmM	LU632_RS06265	0.46	-1.0