Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06035

Experiment: plant=Melon; plant sample=M5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M5; plant location=P2
1,144,401	+				-0.2
1,144,618	+		LU632_RS06030	0.30	-1.9
1,144,677	+		LU632_RS06030	0.35	+0.5
1,144,677	+		LU632_RS06030	0.35	+1.0
1,144,677	+		LU632_RS06030	0.35	-0.7
1,144,743	+		LU632_RS06030	0.41	-1.0
1,144,743	+		LU632_RS06030	0.41	+0.4
1,144,747	+		LU632_RS06030	0.42	-0.0
1,144,747	+		LU632_RS06030	0.42	-1.8
1,144,747	+		LU632_RS06030	0.42	+0.6
1,144,821	+		LU632_RS06030	0.49	+0.0
1,144,837	+		LU632_RS06030	0.50	-0.2
1,144,837	+		LU632_RS06030	0.50	-0.8
1,144,871	+		LU632_RS06030	0.53	-0.4
1,144,871	+		LU632_RS06030	0.53	-0.1
1,144,871	+		LU632_RS06030	0.53	-0.7
1,144,871	+		LU632_RS06030	0.53	+1.0
1,144,872	-		LU632_RS06030	0.53	+1.0
1,144,872	-		LU632_RS06030	0.53	-1.3
1,144,873	+		LU632_RS06030	0.53	+0.4
1,144,873	+		LU632_RS06030	0.53	+0.5
1,144,966	+		LU632_RS06030	0.62	-1.3
1,144,966	+		LU632_RS06030	0.62	-0.4
1,144,966	+		LU632_RS06030	0.62	+1.5
1,144,967	-		LU632_RS06030	0.62	+0.5
1,145,137	-		LU632_RS06030	0.78	-0.5
1,145,255	-		LU632_RS06030	0.89	-0.2
1,145,262	-		LU632_RS06030	0.89	+0.2
1,145,313	+				-2.7
1,145,313	+				+0.7
1,145,314	-				-1.4
1,145,372	+				-0.7
1,145,412	+				-0.4
1,145,412	+				-1.3
1,145,490	+		LU632_RS06035	0.13	+0.4
1,145,574	+		LU632_RS06035	0.22	-0.8
1,145,711	+		LU632_RS06035	0.37	-0.7
1,145,712	-		LU632_RS06035	0.37	-0.2
1,145,910	+		LU632_RS06035	0.59	+1.0
1,145,911	-		LU632_RS06035	0.59	+1.7
1,145,913	+		LU632_RS06035	0.59	+2.7
1,145,914	-		LU632_RS06035	0.59	+0.6
1,146,097	+		LU632_RS06035	0.79	+0.0
1,146,268	-				+0.4
1,146,333	-				+0.1
1,146,333	-				-0.5
1,146,379	+				+0.2
1,146,436	-				-2.3
1,146,444	-				-2.1
1,146,499	+				-3.8
1,146,500	-				+0.0
1,146,537	-	lysA	LU632_RS06040	0.10	-0.4
1,146,537	-	lysA	LU632_RS06040	0.10	-1.6
1,146,723	+	lysA	LU632_RS06040	0.25	-1.9
1,146,723	+	lysA	LU632_RS06040	0.25	-2.8
1,146,724	-	lysA	LU632_RS06040	0.25	-2.5
1,146,724	-	lysA	LU632_RS06040	0.25	+0.0
1,146,994	+	lysA	LU632_RS06040	0.46	-1.8
1,147,132	+	lysA	LU632_RS06040	0.57	-1.4
1,147,158	+	lysA	LU632_RS06040	0.59	-0.4
1,147,165	-	lysA	LU632_RS06040	0.60	+1.6