Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04870 and LU632_RS04875 are separated by 176 nucleotides LU632_RS04875 and LU632_RS04880 are separated by 13 nucleotides
LU632_RS04870: LU632_RS04870 - STY4528 family pathogenicity island replication protein, at 951,529 to 952,767
_RS04870
LU632_RS04875: LU632_RS04875 - TIGR03761 family integrating conjugative element protein, at 952,944 to 953,699
_RS04875
LU632_RS04880: LU632_RS04880 - DNA topoisomerase III, at 953,713 to 955,435
_RS04880
Position (kb) 952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 951.990 kb on + strand, within LU632_RS04870 at 952.011 kb on + strand, within LU632_RS04870 at 952.169 kb on + strand, within LU632_RS04870 at 952.170 kb on - strand, within LU632_RS04870 at 952.170 kb on - strand, within LU632_RS04870 at 952.277 kb on + strand, within LU632_RS04870 at 952.278 kb on - strand, within LU632_RS04870 at 952.348 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.352 kb on + strand, within LU632_RS04870 at 952.353 kb on - strand, within LU632_RS04870 at 952.697 kb on + strand at 952.698 kb on - strand at 952.724 kb on - strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.755 kb on + strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.756 kb on - strand at 952.820 kb on - strand at 952.824 kb on - strand at 952.940 kb on - strand at 952.940 kb on - strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.941 kb on + strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.942 kb on - strand at 952.943 kb on + strand at 953.049 kb on + strand, within LU632_RS04875 at 953.090 kb on + strand, within LU632_RS04875 at 953.136 kb on - strand, within LU632_RS04875 at 953.189 kb on + strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.259 kb on - strand, within LU632_RS04875 at 953.443 kb on - strand, within LU632_RS04875 at 953.476 kb on - strand, within LU632_RS04875 at 953.512 kb on - strand, within LU632_RS04875 at 953.529 kb on + strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.530 kb on - strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.532 kb on + strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.533 kb on - strand, within LU632_RS04875 at 953.622 kb on - strand, within LU632_RS04875 at 953.722 kb on + strand at 953.722 kb on + strand at 953.754 kb on + strand at 953.754 kb on + strand at 953.796 kb on + strand at 953.867 kb on - strand at 953.884 kb on - strand at 953.923 kb on - strand, within LU632_RS04880 at 953.976 kb on + strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 953.977 kb on - strand, within LU632_RS04880 at 954.062 kb on - strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.083 kb on + strand, within LU632_RS04880 at 954.084 kb on - strand, within LU632_RS04880 at 954.159 kb on + strand, within LU632_RS04880 at 954.172 kb on + strand, within LU632_RS04880 at 954.173 kb on - strand, within LU632_RS04880 at 954.236 kb on - strand, within LU632_RS04880 at 954.541 kb on - strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.644 kb on + strand, within LU632_RS04880 at 954.645 kb on - strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.646 kb on + strand, within LU632_RS04880 at 954.691 kb on + strand, within LU632_RS04880
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 951,990 + LU632_RS04870 0.37 +0.3 952,011 + LU632_RS04870 0.39 -2.7 952,169 + LU632_RS04870 0.52 -0.4 952,170 - LU632_RS04870 0.52 +1.9 952,170 - LU632_RS04870 0.52 +0.2 952,277 + LU632_RS04870 0.60 +0.3 952,278 - LU632_RS04870 0.60 -0.5 952,348 + LU632_RS04870 0.66 -0.6 952,352 + LU632_RS04870 0.66 +1.4 952,352 + LU632_RS04870 0.66 +0.1 952,352 + LU632_RS04870 0.66 +2.1 952,352 + LU632_RS04870 0.66 +0.6 952,352 + LU632_RS04870 0.66 -0.4 952,352 + LU632_RS04870 0.66 -1.4 952,352 + LU632_RS04870 0.66 +0.1 952,353 - LU632_RS04870 0.67 -0.8 952,697 + -1.5 952,698 - -0.2 952,724 - +0.5 952,755 + -0.4 952,755 + -1.5 952,755 + -0.4 952,755 + -0.9 952,755 + +1.3 952,756 - +0.1 952,756 - -1.4 952,756 - +0.9 952,820 - +0.6 952,824 - -0.8 952,940 - -0.3 952,940 - -0.5 952,941 + +1.5 952,941 + +0.5 952,941 + +0.1 952,941 + -1.2 952,942 - -0.7 952,942 - +0.4 952,942 - +0.6 952,942 - -1.5 952,942 - +1.4 952,942 - -2.2 952,943 + +1.1 953,049 + LU632_RS04875 0.14 +2.2 953,090 + LU632_RS04875 0.19 -0.4 953,136 - LU632_RS04875 0.25 +0.1 953,189 + LU632_RS04875 0.32 +0.0 953,259 - LU632_RS04875 0.42 -0.5 953,259 - LU632_RS04875 0.42 -0.7 953,443 - LU632_RS04875 0.66 +0.1 953,476 - LU632_RS04875 0.70 -0.7 953,512 - LU632_RS04875 0.75 +1.9 953,529 + LU632_RS04875 0.77 +1.2 953,530 - LU632_RS04875 0.78 -1.8 953,530 - LU632_RS04875 0.78 +0.1 953,532 + LU632_RS04875 0.78 +2.1 953,532 + LU632_RS04875 0.78 -0.5 953,533 - LU632_RS04875 0.78 +0.6 953,533 - LU632_RS04875 0.78 -0.2 953,622 - LU632_RS04875 0.90 +1.2 953,722 + +0.9 953,722 + +2.9 953,754 + -2.0 953,754 + +0.8 953,796 + +0.1 953,867 - -0.2 953,884 - +0.6 953,923 - LU632_RS04880 0.12 +0.7 953,976 + LU632_RS04880 0.15 +1.7 953,977 - LU632_RS04880 0.15 -1.6 953,977 - LU632_RS04880 0.15 -1.7 953,977 - LU632_RS04880 0.15 -0.2 954,062 - LU632_RS04880 0.20 +1.6 954,083 + LU632_RS04880 0.21 +0.3 954,083 + LU632_RS04880 0.21 +0.6 954,084 - LU632_RS04880 0.22 +0.4 954,159 + LU632_RS04880 0.26 -0.3 954,172 + LU632_RS04880 0.27 +1.9 954,173 - LU632_RS04880 0.27 -0.7 954,236 - LU632_RS04880 0.30 +1.6 954,541 - LU632_RS04880 0.48 -0.7 954,644 + LU632_RS04880 0.54 -1.1 954,644 + LU632_RS04880 0.54 +0.7 954,644 + LU632_RS04880 0.54 +1.0 954,645 - LU632_RS04880 0.54 -0.9 954,646 + LU632_RS04880 0.54 +1.1 954,646 + LU632_RS04880 0.54 +0.4 954,646 + LU632_RS04880 0.54 +1.3 954,691 + LU632_RS04880 0.57 +1.2
Or see this region's nucleotide sequence