Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS04515 and LU632_RS04520 are separated by 109 nucleotides LU632_RS04520 and LU632_RS04525 are separated by 376 nucleotides LU632_RS04525 and LU632_RS04530 overlap by 11 nucleotides LU632_RS04530 and LU632_RS04535 are separated by 343 nucleotides
LU632_RS04515: LU632_RS04515 - DUF4158 domain-containing protein, at 887,038 to 887,541
_RS04515
LU632_RS04520: LU632_RS04520 - hypothetical protein, at 887,651 to 887,941
_RS04520
LU632_RS04525: LU632_RS04525 - type II toxin-antitoxin system RelB/DinJ family antitoxin, at 888,318 to 888,572
_RS04525
LU632_RS04530: LU632_RS04530 - type II toxin-antitoxin system RelE/ParE family toxin, at 888,562 to 888,852
_RS04530
LU632_RS04535: LU632_RS04535 - IS91 family transposase, at 889,196 to 890,419
_RS04535
Position (kb) 888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 887.627 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.166 kb on + strand at 888.167 kb on - strand at 888.167 kb on - strand at 888.167 kb on - strand at 888.173 kb on + strand at 888.173 kb on + strand at 888.174 kb on - strand at 888.177 kb on + strand at 888.178 kb on - strand at 888.190 kb on + strand at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.609 kb on + strand, within LU632_RS04530 at 888.782 kb on + strand, within LU632_RS04530 at 888.783 kb on - strand, within LU632_RS04530 at 888.851 kb on - strand at 888.915 kb on - strand at 888.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 887,627 + +0.6 888,166 + +1.2 888,166 + -0.2 888,166 + -0.7 888,166 + -0.6 888,167 - -1.5 888,167 - +1.0 888,167 - +0.6 888,173 + -3.2 888,173 + +6.1 888,174 - +0.6 888,177 + +0.2 888,178 - +0.1 888,190 + +0.0 888,609 + LU632_RS04530 0.16 -0.2 888,609 + LU632_RS04530 0.16 -1.5 888,609 + LU632_RS04530 0.16 +2.3 888,782 + LU632_RS04530 0.76 +0.4 888,783 - LU632_RS04530 0.76 -0.6 888,851 - +0.0 888,915 - -1.1 888,954 + +0.0
Or see this region's nucleotide sequence