Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03620 and LU632_RS03625 overlap by 4 nucleotides LU632_RS03625 and LU632_RS03630 are separated by 6 nucleotides LU632_RS03630 and LU632_RS03635 overlap by 8 nucleotides LU632_RS03635 and LU632_RS03640 overlap by 4 nucleotides
LU632_RS03620: LU632_RS03620 - phage baseplate assembly protein V, at 727,535 to 728,170
_RS03620
LU632_RS03625: LU632_RS03625 - GPW/gp25 family protein, at 728,167 to 728,514
_RS03625
LU632_RS03630: LU632_RS03630 - baseplate assembly protein, at 728,521 to 729,429
_RS03630
LU632_RS03635: LU632_RS03635 - phage tail protein I, at 729,422 to 730,030
_RS03635
LU632_RS03640: LU632_RS03640 - phage tail protein, at 730,027 to 731,085
_RS03640
Position (kb) 728
729
730 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 727.534 kb on + strand at 727.540 kb on + strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.541 kb on - strand at 727.546 kb on - strand at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.660 kb on + strand, within LU632_RS03620 at 727.661 kb on - strand, within LU632_RS03620 at 727.869 kb on - strand, within LU632_RS03620 at 727.893 kb on + strand, within LU632_RS03620 at 728.101 kb on + strand, within LU632_RS03620 at 728.229 kb on + strand, within LU632_RS03625 at 728.229 kb on + strand, within LU632_RS03625 at 728.230 kb on - strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.322 kb on + strand, within LU632_RS03625 at 728.323 kb on - strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.406 kb on + strand, within LU632_RS03625 at 728.407 kb on + strand, within LU632_RS03625 at 728.407 kb on - strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.446 kb on + strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.447 kb on - strand, within LU632_RS03625 at 728.454 kb on + strand, within LU632_RS03625 at 728.470 kb on - strand, within LU632_RS03625 at 728.512 kb on + strand at 728.719 kb on - strand, within LU632_RS03630 at 729.030 kb on + strand, within LU632_RS03630 at 729.090 kb on + strand, within LU632_RS03630 at 729.247 kb on + strand, within LU632_RS03630 at 729.369 kb on + strand at 729.397 kb on + strand at 729.404 kb on + strand at 729.405 kb on - strand at 729.408 kb on + strand at 729.409 kb on - strand at 729.803 kb on + strand, within LU632_RS03635 at 729.804 kb on - strand, within LU632_RS03635 at 729.896 kb on + strand, within LU632_RS03635 at 729.897 kb on - strand, within LU632_RS03635 at 729.897 kb on - strand, within LU632_RS03635 at 729.915 kb on - strand, within LU632_RS03635 at 729.977 kb on + strand at 729.978 kb on - strand at 730.273 kb on - strand, within LU632_RS03640 at 730.322 kb on + strand, within LU632_RS03640 at 730.322 kb on + strand, within LU632_RS03640 at 730.322 kb on + strand, within LU632_RS03640 at 730.323 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.355 kb on - strand, within LU632_RS03640 at 730.356 kb on + strand, within LU632_RS03640
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 727,534 + -0.2 727,540 + -0.6 727,541 - +0.1 727,541 - +1.5 727,541 - +1.2 727,541 - +0.6 727,541 - +3.2 727,546 - -0.6 727,660 + LU632_RS03620 0.20 -1.3 727,660 + LU632_RS03620 0.20 +1.0 727,660 + LU632_RS03620 0.20 -1.1 727,660 + LU632_RS03620 0.20 +0.0 727,661 - LU632_RS03620 0.20 +1.7 727,869 - LU632_RS03620 0.53 -2.1 727,893 + LU632_RS03620 0.56 -0.3 728,101 + LU632_RS03620 0.89 -0.9 728,229 + LU632_RS03625 0.18 +2.3 728,229 + LU632_RS03625 0.18 -0.1 728,230 - LU632_RS03625 0.18 +1.1 728,322 + LU632_RS03625 0.45 -1.3 728,322 + LU632_RS03625 0.45 +0.1 728,323 - LU632_RS03625 0.45 +1.3 728,406 + LU632_RS03625 0.69 -1.2 728,406 + LU632_RS03625 0.69 -0.2 728,406 + LU632_RS03625 0.69 -2.8 728,406 + LU632_RS03625 0.69 +1.3 728,407 + LU632_RS03625 0.69 -1.1 728,407 - LU632_RS03625 0.69 +0.1 728,446 + LU632_RS03625 0.80 +0.8 728,446 + LU632_RS03625 0.80 +0.8 728,446 + LU632_RS03625 0.80 -0.1 728,447 - LU632_RS03625 0.80 +1.7 728,447 - LU632_RS03625 0.80 +0.6 728,447 - LU632_RS03625 0.80 +1.6 728,454 + LU632_RS03625 0.82 +1.7 728,470 - LU632_RS03625 0.87 -1.0 728,512 + -0.5 728,719 - LU632_RS03630 0.22 -0.3 729,030 + LU632_RS03630 0.56 -0.6 729,090 + LU632_RS03630 0.63 -0.6 729,247 + LU632_RS03630 0.80 +0.5 729,369 + +0.5 729,397 + -1.1 729,404 + -2.7 729,405 - -1.9 729,408 + +1.2 729,409 - -2.0 729,803 + LU632_RS03635 0.63 +0.9 729,804 - LU632_RS03635 0.63 -1.4 729,896 + LU632_RS03635 0.78 -0.2 729,897 - LU632_RS03635 0.78 -2.3 729,897 - LU632_RS03635 0.78 -0.2 729,915 - LU632_RS03635 0.81 -0.1 729,977 + +0.1 729,978 - +0.5 730,273 - LU632_RS03640 0.23 +0.1 730,322 + LU632_RS03640 0.28 -0.5 730,322 + LU632_RS03640 0.28 +0.1 730,322 + LU632_RS03640 0.28 -0.3 730,323 - LU632_RS03640 0.28 +1.1 730,355 - LU632_RS03640 0.31 -0.8 730,355 - LU632_RS03640 0.31 +0.4 730,355 - LU632_RS03640 0.31 +0.7 730,355 - LU632_RS03640 0.31 +2.7 730,355 - LU632_RS03640 0.31 +0.3 730,355 - LU632_RS03640 0.31 -0.6 730,355 - LU632_RS03640 0.31 +0.8 730,356 + LU632_RS03640 0.31 -2.2
Or see this region's nucleotide sequence