Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS03440

Experiment: plant=Melon; plant sample=M5; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS03435 and LU632_RS03440 are separated by 396 nucleotidesLU632_RS03440 and LU632_RS03445 are separated by 18 nucleotidesLU632_RS03445 and LU632_RS03450 are separated by 103 nucleotides LU632_RS03435: LU632_RS03435 - TOPRIM and DUF927 domain-containing protein, at 700,192 to 702,996 _RS03435 LU632_RS03440: LU632_RS03440 - single-stranded DNA-binding protein, at 703,393 to 703,836 _RS03440 LU632_RS03445: LU632_RS03445 - ProQ/FinO family protein, at 703,855 to 704,322 _RS03445 LU632_RS03450: LU632_RS03450 - hypothetical protein, at 704,426 to 705,979 _RS03450 Position (kb) 703 704Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 702.472 kb on + strand, within LU632_RS03435at 702.547 kb on - strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.592 kb on + strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.593 kb on - strand, within LU632_RS03435at 702.645 kb on + strand, within LU632_RS03435at 702.670 kb on - strand, within LU632_RS03435at 702.673 kb on - strand, within LU632_RS03435at 702.725 kb on + strandat 702.794 kb on - strandat 702.794 kb on - strandat 702.825 kb on - strandat 702.825 kb on - strandat 702.825 kb on - strandat 702.949 kb on + strandat 702.949 kb on + strandat 702.950 kb on - strandat 702.962 kb on - strandat 703.083 kb on + strandat 703.343 kb on + strandat 703.347 kb on + strandat 703.347 kb on + strandat 703.347 kb on + strandat 703.348 kb on - strandat 703.348 kb on - strandat 703.348 kb on - strandat 703.349 kb on + strandat 703.349 kb on + strandat 703.350 kb on - strandat 703.351 kb on + strandat 703.351 kb on + strandat 703.406 kb on + strandat 703.414 kb on + strandat 703.491 kb on - strand, within LU632_RS03440at 703.506 kb on + strand, within LU632_RS03440at 703.653 kb on + strand, within LU632_RS03440at 703.654 kb on - strand, within LU632_RS03440at 703.819 kb on + strandat 703.820 kb on - strandat 703.822 kb on + strandat 703.823 kb on - strandat 703.823 kb on - strandat 703.975 kb on - strand, within LU632_RS03445at 704.045 kb on + strand, within LU632_RS03445at 704.045 kb on + strand, within LU632_RS03445at 704.045 kb on + strand, within LU632_RS03445at 704.046 kb on - strand, within LU632_RS03445at 704.046 kb on - strand, within LU632_RS03445at 704.084 kb on + strand, within LU632_RS03445at 704.084 kb on + strand, within LU632_RS03445at 704.101 kb on + strand, within LU632_RS03445at 704.101 kb on + strand, within LU632_RS03445at 704.101 kb on + strand, within LU632_RS03445at 704.101 kb on + strand, within LU632_RS03445at 704.102 kb on - strand, within LU632_RS03445at 704.144 kb on - strand, within LU632_RS03445at 704.176 kb on + strand, within LU632_RS03445at 704.183 kb on + strand, within LU632_RS03445at 704.183 kb on + strand, within LU632_RS03445at 704.447 kb on + strandat 704.448 kb on - strandat 704.522 kb on - strandat 704.562 kb on + strandat 704.566 kb on + strandat 704.640 kb on + strand, within LU632_RS03450at 704.641 kb on - strand, within LU632_RS03450at 704.641 kb on - strand, within LU632_RS03450

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2
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702,472 + LU632_RS03435 0.81 -0.3
702,547 - LU632_RS03435 0.84 +0.4
702,592 + LU632_RS03435 0.86 +1.3
702,592 + LU632_RS03435 0.86 -0.8
702,592 + LU632_RS03435 0.86 -0.3
702,593 - LU632_RS03435 0.86 -0.3
702,593 - LU632_RS03435 0.86 +0.8
702,593 - LU632_RS03435 0.86 -0.9
702,645 + LU632_RS03435 0.87 +0.7
702,670 - LU632_RS03435 0.88 -1.4
702,673 - LU632_RS03435 0.88 +0.8
702,725 + -1.2
702,794 - +0.8
702,794 - -0.6
702,825 - -0.3
702,825 - -1.3
702,825 - +0.2
702,949 + -0.1
702,949 + -2.3
702,950 - -0.1
702,962 - -2.4
703,083 + +0.0
703,343 + +1.4
703,347 + +1.0
703,347 + -0.2
703,347 + -2.0
703,348 - +2.3
703,348 - +0.7
703,348 - -0.8
703,349 + +0.1
703,349 + +0.9
703,350 - -0.8
703,351 + -0.6
703,351 + -1.6
703,406 + -0.5
703,414 + +1.0
703,491 - LU632_RS03440 0.22 -0.8
703,506 + LU632_RS03440 0.25 -0.7
703,653 + LU632_RS03440 0.59 -2.0
703,654 - LU632_RS03440 0.59 -0.3
703,819 + +0.5
703,820 - -1.7
703,822 + -3.7
703,823 - -1.8
703,823 - +2.2
703,975 - LU632_RS03445 0.26 +0.7
704,045 + LU632_RS03445 0.41 +0.3
704,045 + LU632_RS03445 0.41 +0.8
704,045 + LU632_RS03445 0.41 -0.8
704,046 - LU632_RS03445 0.41 +0.4
704,046 - LU632_RS03445 0.41 -1.4
704,084 + LU632_RS03445 0.49 -0.1
704,084 + LU632_RS03445 0.49 -0.3
704,101 + LU632_RS03445 0.53 -1.1
704,101 + LU632_RS03445 0.53 -0.3
704,101 + LU632_RS03445 0.53 +1.2
704,101 + LU632_RS03445 0.53 +0.4
704,102 - LU632_RS03445 0.53 -0.8
704,144 - LU632_RS03445 0.62 +0.1
704,176 + LU632_RS03445 0.69 +0.5
704,183 + LU632_RS03445 0.70 -0.8
704,183 + LU632_RS03445 0.70 -1.4
704,447 + +0.9
704,448 - -1.7
704,522 - -0.1
704,562 + +0.0
704,566 + -0.7
704,640 + LU632_RS03450 0.14 +0.1
704,641 - LU632_RS03450 0.14 +0.7
704,641 - LU632_RS03450 0.14 -1.1

Or see this region's nucleotide sequence