Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03060 and LU632_RS03065 overlap by 4 nucleotides LU632_RS03065 and aroP are separated by 352 nucleotides
LU632_RS03060: LU632_RS03060 - IS1 family transposase, at 624,497 to 625,000
_RS03060
LU632_RS03065: LU632_RS03065 - hypothetical protein, at 624,997 to 625,014
_RS03065
LU632_RS03070: aroP - aromatic amino acid transporter AroP, at 625,367 to 626,722
aroP
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 624.505 kb on - strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.259 kb on - strand at 625.261 kb on - strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.414 kb on + strand at 625.414 kb on + strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.476 kb on - strand at 625.484 kb on - strand at 625.484 kb on - strand at 625.551 kb on - strand, within aroP at 625.612 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.811 kb on - strand, within aroP at 625.828 kb on + strand, within aroP at 625.828 kb on + strand, within aroP at 625.950 kb on + strand, within aroP at 625.983 kb on + strand, within aroP at 625.984 kb on - strand, within aroP
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 624,505 - -0.2 625,258 + +1.5 625,258 + -0.5 625,258 + +0.6 625,259 - -0.9 625,261 - +0.2 625,323 + -0.1 625,323 + -1.7 625,323 + +0.3 625,323 + -1.4 625,324 - -3.0 625,324 - -1.6 625,324 - +1.3 625,324 - -0.3 625,324 - -1.5 625,414 + -1.9 625,414 + -0.9 625,471 + -1.2 625,471 + +1.2 625,476 - -1.8 625,484 - +0.0 625,484 - +0.3 625,551 - aroP LU632_RS03070 0.14 +0.8 625,612 + aroP LU632_RS03070 0.18 -1.4 625,674 + aroP LU632_RS03070 0.23 -0.0 625,674 + aroP LU632_RS03070 0.23 +0.3 625,678 + aroP LU632_RS03070 0.23 -1.7 625,678 + aroP LU632_RS03070 0.23 -1.6 625,679 - aroP LU632_RS03070 0.23 +0.7 625,679 - aroP LU632_RS03070 0.23 +0.4 625,679 - aroP LU632_RS03070 0.23 -2.1 625,811 - aroP LU632_RS03070 0.33 -1.6 625,828 + aroP LU632_RS03070 0.34 -1.4 625,828 + aroP LU632_RS03070 0.34 -1.2 625,950 + aroP LU632_RS03070 0.43 -0.6 625,983 + aroP LU632_RS03070 0.45 +0.4 625,984 - aroP LU632_RS03070 0.46 -1.2
Or see this region's nucleotide sequence