Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ilvN and tnpA are separated by 173 nucleotides tnpA and cra are separated by 219 nucleotides cra and mraZ are separated by 537 nucleotides mraZ and rsmH are separated by 2 nucleotides
LU632_RS02890: ilvN - acetolactate synthase small subunit, at 589,841 to 590,332
ilvN
LU632_RS02895: tnpA - IS200/IS605 family transposase, at 590,506 to 590,943
tnpA
LU632_RS02900: cra - catabolite repressor/activator, at 591,163 to 592,173
cra
LU632_RS02905: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 592,711 to 593,169
mraZ
LU632_RS02910: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 593,172 to 594,113
rsmH
Position (kb) 591
592
593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.006 kb on + strand at 591.070 kb on + strand at 591.071 kb on - strand at 591.074 kb on + strand at 591.074 kb on + strand at 591.075 kb on - strand at 591.079 kb on + strand at 591.197 kb on + strand at 591.217 kb on + strand at 591.217 kb on + strand at 591.217 kb on + strand at 591.218 kb on - strand at 591.218 kb on - strand at 591.218 kb on - strand at 591.295 kb on + strand, within cra at 591.296 kb on - strand, within cra at 591.301 kb on + strand, within cra at 591.301 kb on + strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra at 591.302 kb on - strand, within cra at 591.389 kb on - strand, within cra at 591.406 kb on + strand, within cra at 591.407 kb on - strand, within cra at 591.489 kb on + strand, within cra at 591.490 kb on - strand, within cra at 591.504 kb on - strand, within cra at 591.526 kb on - strand, within cra at 591.526 kb on - strand, within cra at 591.805 kb on - strand, within cra at 591.808 kb on + strand, within cra at 591.808 kb on + strand, within cra at 591.908 kb on + strand, within cra at 591.908 kb on + strand, within cra at 591.920 kb on + strand, within cra at 591.998 kb on + strand, within cra at 592.155 kb on - strand at 592.167 kb on + strand at 592.168 kb on - strand at 592.171 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.231 kb on + strand at 592.234 kb on - strand at 592.234 kb on - strand at 592.405 kb on - strand at 592.408 kb on - strand at 592.414 kb on + strand at 592.415 kb on - strand at 592.468 kb on + strand at 592.475 kb on - strand at 592.476 kb on + strand at 592.618 kb on - strand at 592.618 kb on - strand at 592.645 kb on + strand at 592.818 kb on + strand, within mraZ at 592.875 kb on + strand, within mraZ at 593.086 kb on + strand, within mraZ at 593.167 kb on + strand at 593.167 kb on + strand at 593.167 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand at 593.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 591,006 + +0.2 591,070 + -0.1 591,071 - +2.1 591,074 + -0.3 591,074 + -1.4 591,075 - +1.4 591,079 + -1.1 591,197 + -0.9 591,217 + +0.3 591,217 + -0.7 591,217 + +2.0 591,218 - +1.3 591,218 - +1.5 591,218 - -1.4 591,295 + cra LU632_RS02900 0.13 +0.7 591,296 - cra LU632_RS02900 0.13 +1.3 591,301 + cra LU632_RS02900 0.14 +0.2 591,301 + cra LU632_RS02900 0.14 +2.1 591,302 - cra LU632_RS02900 0.14 +0.6 591,302 - cra LU632_RS02900 0.14 -0.5 591,302 - cra LU632_RS02900 0.14 -0.6 591,302 - cra LU632_RS02900 0.14 +0.3 591,389 - cra LU632_RS02900 0.22 -0.0 591,406 + cra LU632_RS02900 0.24 -0.2 591,407 - cra LU632_RS02900 0.24 +2.1 591,489 + cra LU632_RS02900 0.32 -0.1 591,490 - cra LU632_RS02900 0.32 -0.6 591,504 - cra LU632_RS02900 0.34 +1.3 591,526 - cra LU632_RS02900 0.36 +1.3 591,526 - cra LU632_RS02900 0.36 -2.2 591,805 - cra LU632_RS02900 0.64 -1.6 591,808 + cra LU632_RS02900 0.64 -1.2 591,808 + cra LU632_RS02900 0.64 -1.9 591,908 + cra LU632_RS02900 0.74 +2.5 591,908 + cra LU632_RS02900 0.74 +0.8 591,920 + cra LU632_RS02900 0.75 +0.0 591,998 + cra LU632_RS02900 0.83 +0.1 592,155 - -0.3 592,167 + +1.4 592,168 - +0.8 592,171 + +2.2 592,231 + +2.5 592,231 + +0.6 592,231 + -0.1 592,231 + +0.8 592,234 - -1.7 592,234 - -0.1 592,405 - -0.2 592,408 - +0.7 592,414 + -0.9 592,415 - -0.1 592,468 + +0.5 592,475 - +2.1 592,476 + -0.2 592,618 - -0.8 592,618 - -0.7 592,645 + -2.8 592,818 + mraZ LU632_RS02905 0.23 +0.2 592,875 + mraZ LU632_RS02905 0.36 -1.0 593,086 + mraZ LU632_RS02905 0.82 -1.5 593,167 + -0.8 593,167 + -2.6 593,167 + +1.1 593,171 + -1.1 593,171 + -1.7 593,171 + -0.5 593,171 + -1.0
Or see this region's nucleotide sequence