Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoB and deoD are separated by 39 nucleotides deoD and LU632_RS02535 are separated by 187 nucleotides LU632_RS02535 and LU632_RS02540 are separated by 519 nucleotides
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
LU632_RS02530: deoD - purine-nucleoside phosphorylase, at 502,370 to 503,089
deoD
LU632_RS02535: LU632_RS02535 - IS1 family transposase, at 503,277 to 503,974
_RS02535
LU632_RS02540: LU632_RS02540 - YtjB family periplasmic protein, at 504,494 to 505,156
_RS02540
Position (kb) 503
504 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 502.286 kb on + strand at 502.286 kb on + strand at 502.322 kb on - strand at 502.343 kb on - strand at 502.384 kb on + strand at 502.385 kb on - strand at 502.386 kb on + strand at 502.387 kb on - strand at 502.488 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.528 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.725 kb on + strand, within deoD at 502.774 kb on - strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.890 kb on - strand, within deoD at 502.972 kb on + strand, within deoD at 502.973 kb on - strand, within deoD at 503.146 kb on + strand at 503.150 kb on + strand at 503.150 kb on + strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.212 kb on + strand at 504.003 kb on - strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.032 kb on + strand at 504.035 kb on - strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.043 kb on - strand at 504.091 kb on + strand at 504.269 kb on - strand at 504.305 kb on - strand at 504.625 kb on + strand, within LU632_RS02540 at 504.625 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.789 kb on + strand, within LU632_RS02540 at 504.913 kb on + strand, within LU632_RS02540
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 502,286 + -2.3 502,286 + -0.9 502,322 - -1.5 502,343 - -1.4 502,384 + +3.0 502,385 - -0.4 502,386 + +2.7 502,387 - +1.2 502,488 + deoD LU632_RS02530 0.16 -0.2 502,526 + deoD LU632_RS02530 0.22 -2.4 502,526 + deoD LU632_RS02530 0.22 +1.5 502,526 + deoD LU632_RS02530 0.22 -0.5 502,527 - deoD LU632_RS02530 0.22 +0.3 502,527 - deoD LU632_RS02530 0.22 -0.5 502,527 - deoD LU632_RS02530 0.22 +0.1 502,528 + deoD LU632_RS02530 0.22 -0.9 502,665 + deoD LU632_RS02530 0.41 +0.0 502,665 + deoD LU632_RS02530 0.41 -0.7 502,725 + deoD LU632_RS02530 0.49 +0.2 502,774 - deoD LU632_RS02530 0.56 -1.2 502,850 + deoD LU632_RS02530 0.67 -0.0 502,850 + deoD LU632_RS02530 0.67 -1.2 502,850 + deoD LU632_RS02530 0.67 +0.2 502,851 - deoD LU632_RS02530 0.67 -1.4 502,851 - deoD LU632_RS02530 0.67 +1.8 502,851 - deoD LU632_RS02530 0.67 -0.0 502,890 - deoD LU632_RS02530 0.72 +1.5 502,972 + deoD LU632_RS02530 0.84 +0.5 502,973 - deoD LU632_RS02530 0.84 +1.0 503,146 + -0.2 503,150 + +0.6 503,150 + +0.4 503,151 - -1.4 503,151 - -1.0 503,151 - -1.9 503,151 - +1.2 503,151 - +1.5 503,212 + -0.0 504,003 - -1.2 504,030 + +0.1 504,030 + -0.3 504,030 + -0.7 504,030 + +1.9 504,030 + +0.6 504,030 + +0.8 504,030 + -1.1 504,030 + -1.2 504,031 - -1.3 504,031 - -0.9 504,031 - +0.9 504,031 - +0.9 504,031 - -0.1 504,031 - -0.8 504,031 - -0.7 504,031 - +2.0 504,031 - +0.7 504,032 + +0.3 504,035 - +1.5 504,042 + -0.5 504,042 + -0.9 504,042 + -2.9 504,043 - +0.6 504,091 + +0.1 504,269 - -0.5 504,305 - +1.0 504,625 + LU632_RS02540 0.20 -0.5 504,625 + LU632_RS02540 0.20 -0.6 504,659 + LU632_RS02540 0.25 +1.8 504,659 + LU632_RS02540 0.25 +1.1 504,659 + LU632_RS02540 0.25 -0.8 504,789 + LU632_RS02540 0.44 -0.7 504,913 + LU632_RS02540 0.63 -1.7
Or see this region's nucleotide sequence