Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoC and LU632_RS02520 are separated by 15 nucleotides LU632_RS02520 and deoB are separated by 79 nucleotides deoB and deoD are separated by 39 nucleotides deoD and LU632_RS02535 are separated by 187 nucleotides
LU632_RS02515: deoC - deoxyribose-phosphate aldolase, at 499,390 to 500,169
deoC
LU632_RS02520: LU632_RS02520 - thymidine phosphorylase, at 500,185 to 501,027
_RS02520
LU632_RS02525: deoB - phosphopentomutase, at 501,107 to 502,330
deoB
LU632_RS02530: deoD - purine-nucleoside phosphorylase, at 502,370 to 503,089
deoD
LU632_RS02535: LU632_RS02535 - IS1 family transposase, at 503,277 to 503,974
_RS02535
Position (kb) 501
502
503 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.331 kb on + strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.332 kb on - strand, within LU632_RS02520 at 500.403 kb on + strand, within LU632_RS02520 at 500.425 kb on + strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.426 kb on - strand, within LU632_RS02520 at 500.429 kb on - strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.494 kb on + strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.495 kb on - strand, within LU632_RS02520 at 500.511 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.857 kb on + strand, within LU632_RS02520 at 500.858 kb on - strand, within LU632_RS02520 at 500.959 kb on + strand at 500.959 kb on + strand at 501.051 kb on + strand at 501.117 kb on + strand at 501.117 kb on + strand at 501.205 kb on + strand at 501.206 kb on - strand at 501.247 kb on + strand, within deoB at 501.247 kb on + strand, within deoB at 501.248 kb on - strand, within deoB at 501.248 kb on - strand, within deoB at 501.368 kb on + strand, within deoB at 501.397 kb on + strand, within deoB at 501.453 kb on - strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.586 kb on + strand, within deoB at 501.587 kb on - strand, within deoB at 501.587 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.612 kb on - strand, within deoB at 501.677 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.722 kb on + strand, within deoB at 501.723 kb on - strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.724 kb on + strand, within deoB at 501.725 kb on - strand, within deoB at 501.725 kb on - strand, within deoB at 501.826 kb on + strand, within deoB at 501.827 kb on - strand, within deoB at 501.897 kb on - strand, within deoB at 501.913 kb on + strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 501.914 kb on - strand, within deoB at 502.195 kb on + strand, within deoB at 502.196 kb on - strand, within deoB at 502.211 kb on + strand at 502.286 kb on + strand at 502.286 kb on + strand at 502.322 kb on - strand at 502.343 kb on - strand at 502.384 kb on + strand at 502.385 kb on - strand at 502.386 kb on + strand at 502.387 kb on - strand at 502.488 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.526 kb on + strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.527 kb on - strand, within deoD at 502.528 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.665 kb on + strand, within deoD at 502.725 kb on + strand, within deoD at 502.774 kb on - strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.850 kb on + strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.851 kb on - strand, within deoD at 502.890 kb on - strand, within deoD at 502.972 kb on + strand, within deoD at 502.973 kb on - strand, within deoD at 503.146 kb on + strand at 503.150 kb on + strand at 503.150 kb on + strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.151 kb on - strand at 503.212 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 500,331 + LU632_RS02520 0.17 +0.6 500,331 + LU632_RS02520 0.17 +0.1 500,331 + LU632_RS02520 0.17 +0.5 500,332 - LU632_RS02520 0.17 -0.9 500,332 - LU632_RS02520 0.17 -1.1 500,403 + LU632_RS02520 0.26 +0.2 500,425 + LU632_RS02520 0.28 +0.6 500,426 - LU632_RS02520 0.29 -0.3 500,426 - LU632_RS02520 0.29 +0.2 500,429 - LU632_RS02520 0.29 +3.8 500,494 + LU632_RS02520 0.37 +0.0 500,494 + LU632_RS02520 0.37 -1.0 500,494 + LU632_RS02520 0.37 +0.2 500,494 + LU632_RS02520 0.37 -1.9 500,495 - LU632_RS02520 0.37 +0.1 500,495 - LU632_RS02520 0.37 +0.5 500,495 - LU632_RS02520 0.37 -1.3 500,511 + LU632_RS02520 0.39 +0.7 500,857 + LU632_RS02520 0.80 -0.3 500,857 + LU632_RS02520 0.80 -0.3 500,858 - LU632_RS02520 0.80 -2.1 500,959 + -0.1 500,959 + -0.9 501,051 + -0.2 501,117 + -1.4 501,117 + -1.5 501,205 + -0.7 501,206 - -1.6 501,247 + deoB LU632_RS02525 0.11 +0.3 501,247 + deoB LU632_RS02525 0.11 -1.7 501,248 - deoB LU632_RS02525 0.12 -1.0 501,248 - deoB LU632_RS02525 0.12 -1.3 501,368 + deoB LU632_RS02525 0.21 -0.7 501,397 + deoB LU632_RS02525 0.24 -0.8 501,453 - deoB LU632_RS02525 0.28 +0.8 501,586 + deoB LU632_RS02525 0.39 -1.2 501,586 + deoB LU632_RS02525 0.39 -0.4 501,586 + deoB LU632_RS02525 0.39 -0.3 501,586 + deoB LU632_RS02525 0.39 -0.1 501,587 - deoB LU632_RS02525 0.39 -1.6 501,587 - deoB LU632_RS02525 0.39 -0.5 501,612 - deoB LU632_RS02525 0.41 -0.8 501,612 - deoB LU632_RS02525 0.41 +0.2 501,677 + deoB LU632_RS02525 0.47 -0.0 501,722 + deoB LU632_RS02525 0.50 -1.8 501,722 + deoB LU632_RS02525 0.50 +1.4 501,723 - deoB LU632_RS02525 0.50 -1.8 501,724 + deoB LU632_RS02525 0.50 +0.5 501,724 + deoB LU632_RS02525 0.50 -2.2 501,724 + deoB LU632_RS02525 0.50 +0.4 501,725 - deoB LU632_RS02525 0.50 -2.0 501,725 - deoB LU632_RS02525 0.50 -1.4 501,826 + deoB LU632_RS02525 0.59 +0.4 501,827 - deoB LU632_RS02525 0.59 -1.2 501,897 - deoB LU632_RS02525 0.65 +0.5 501,913 + deoB LU632_RS02525 0.66 +0.1 501,914 - deoB LU632_RS02525 0.66 -1.7 501,914 - deoB LU632_RS02525 0.66 -0.2 501,914 - deoB LU632_RS02525 0.66 -0.6 502,195 + deoB LU632_RS02525 0.89 -0.5 502,196 - deoB LU632_RS02525 0.89 +1.0 502,211 + -0.7 502,286 + -2.3 502,286 + -0.9 502,322 - -1.5 502,343 - -1.4 502,384 + +3.0 502,385 - -0.4 502,386 + +2.7 502,387 - +1.2 502,488 + deoD LU632_RS02530 0.16 -0.2 502,526 + deoD LU632_RS02530 0.22 -2.4 502,526 + deoD LU632_RS02530 0.22 +1.5 502,526 + deoD LU632_RS02530 0.22 -0.5 502,527 - deoD LU632_RS02530 0.22 +0.3 502,527 - deoD LU632_RS02530 0.22 -0.5 502,527 - deoD LU632_RS02530 0.22 +0.1 502,528 + deoD LU632_RS02530 0.22 -0.9 502,665 + deoD LU632_RS02530 0.41 +0.0 502,665 + deoD LU632_RS02530 0.41 -0.7 502,725 + deoD LU632_RS02530 0.49 +0.2 502,774 - deoD LU632_RS02530 0.56 -1.2 502,850 + deoD LU632_RS02530 0.67 -0.0 502,850 + deoD LU632_RS02530 0.67 -1.2 502,850 + deoD LU632_RS02530 0.67 +0.2 502,851 - deoD LU632_RS02530 0.67 -1.4 502,851 - deoD LU632_RS02530 0.67 +1.8 502,851 - deoD LU632_RS02530 0.67 -0.0 502,890 - deoD LU632_RS02530 0.72 +1.5 502,972 + deoD LU632_RS02530 0.84 +0.5 502,973 - deoD LU632_RS02530 0.84 +1.0 503,146 + -0.2 503,150 + +0.6 503,150 + +0.4 503,151 - -1.4 503,151 - -1.0 503,151 - -1.9 503,151 - +1.2 503,151 - +1.5 503,212 + -0.0
Or see this region's nucleotide sequence