Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02240 and LU632_RS02245 are separated by 132 nucleotides LU632_RS02245 and LU632_RS02250 are separated by 459 nucleotides
LU632_RS02240: LU632_RS02240 - hypothetical protein, at 443,061 to 443,366
_RS02240
LU632_RS02245: LU632_RS02245 - hypothetical protein, at 443,499 to 443,918
_RS02245
LU632_RS02250: LU632_RS02250 - aldose 1-epimerase family protein, at 444,378 to 445,586
_RS02250
Position (kb) 443
444 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.856 kb on + strand at 442.856 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.961 kb on + strand at 442.962 kb on - strand at 443.003 kb on - strand at 443.077 kb on - strand at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.111 kb on + strand, within LU632_RS02240 at 443.112 kb on - strand, within LU632_RS02240 at 443.113 kb on + strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.114 kb on - strand, within LU632_RS02240 at 443.167 kb on - strand, within LU632_RS02240 at 443.229 kb on + strand, within LU632_RS02240 at 443.230 kb on - strand, within LU632_RS02240 at 443.232 kb on - strand, within LU632_RS02240 at 443.240 kb on + strand, within LU632_RS02240 at 443.291 kb on - strand, within LU632_RS02240 at 443.293 kb on - strand, within LU632_RS02240 at 443.321 kb on - strand, within LU632_RS02240 at 443.341 kb on - strand at 443.478 kb on - strand at 443.510 kb on + strand at 443.516 kb on + strand at 443.517 kb on - strand at 443.520 kb on - strand at 443.523 kb on + strand at 443.524 kb on - strand at 443.560 kb on + strand, within LU632_RS02245 at 443.567 kb on + strand, within LU632_RS02245 at 443.569 kb on + strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.570 kb on - strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.587 kb on + strand, within LU632_RS02245 at 443.619 kb on - strand, within LU632_RS02245 at 443.633 kb on + strand, within LU632_RS02245 at 443.635 kb on + strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.636 kb on - strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.759 kb on + strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.760 kb on - strand, within LU632_RS02245 at 443.762 kb on - strand, within LU632_RS02245 at 443.795 kb on + strand, within LU632_RS02245 at 443.865 kb on - strand, within LU632_RS02245 at 443.869 kb on + strand, within LU632_RS02245 at 443.870 kb on - strand, within LU632_RS02245 at 443.927 kb on + strand at 443.927 kb on + strand at 443.927 kb on + strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.928 kb on - strand at 443.959 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.022 kb on + strand at 444.023 kb on - strand at 444.397 kb on + strand at 444.398 kb on - strand at 444.401 kb on + strand at 444.416 kb on + strand at 444.416 kb on + strand at 444.417 kb on - strand at 444.418 kb on + strand at 444.493 kb on + strand at 444.597 kb on - strand, within LU632_RS02250 at 444.824 kb on + strand, within LU632_RS02250 at 444.825 kb on - strand, within LU632_RS02250 at 444.828 kb on + strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.829 kb on - strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.830 kb on + strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.831 kb on - strand, within LU632_RS02250 at 444.847 kb on + strand, within LU632_RS02250 at 444.848 kb on - strand, within LU632_RS02250
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 442,553 + +0.7 442,676 - +0.4 442,676 - -1.0 442,758 + -0.4 442,785 + -0.3 442,785 + +0.1 442,785 + +0.6 442,785 + +0.0 442,786 - -1.7 442,786 - +0.7 442,786 - -2.9 442,786 - -1.9 442,786 - +0.3 442,856 + +0.1 442,856 + -0.6 442,961 + -0.1 442,961 + +0.6 442,961 + +1.8 442,962 - +0.8 443,003 - -0.6 443,077 - +0.2 443,111 + LU632_RS02240 0.16 +1.3 443,111 + LU632_RS02240 0.16 -0.2 443,111 + LU632_RS02240 0.16 -0.5 443,112 - LU632_RS02240 0.17 -1.0 443,113 + LU632_RS02240 0.17 +1.4 443,114 - LU632_RS02240 0.17 +0.0 443,114 - LU632_RS02240 0.17 +0.6 443,167 - LU632_RS02240 0.35 +0.6 443,229 + LU632_RS02240 0.55 -0.1 443,230 - LU632_RS02240 0.55 -0.5 443,232 - LU632_RS02240 0.56 -1.2 443,240 + LU632_RS02240 0.58 +0.8 443,291 - LU632_RS02240 0.75 +0.4 443,293 - LU632_RS02240 0.76 -1.5 443,321 - LU632_RS02240 0.85 -0.8 443,341 - +1.8 443,478 - +0.3 443,510 + -0.1 443,516 + -2.0 443,517 - -2.1 443,520 - +2.0 443,523 + +1.2 443,524 - +1.5 443,560 + LU632_RS02245 0.15 -0.4 443,567 + LU632_RS02245 0.16 +0.0 443,569 + LU632_RS02245 0.17 -1.2 443,570 - LU632_RS02245 0.17 -1.6 443,570 - LU632_RS02245 0.17 +2.0 443,587 + LU632_RS02245 0.21 -1.0 443,587 + LU632_RS02245 0.21 -0.7 443,619 - LU632_RS02245 0.29 -1.4 443,633 + LU632_RS02245 0.32 +0.0 443,635 + LU632_RS02245 0.32 -2.1 443,636 - LU632_RS02245 0.33 +1.3 443,636 - LU632_RS02245 0.33 +0.8 443,636 - LU632_RS02245 0.33 -0.5 443,759 + LU632_RS02245 0.62 +0.5 443,759 + LU632_RS02245 0.62 +0.6 443,760 - LU632_RS02245 0.62 -1.3 443,760 - LU632_RS02245 0.62 +0.1 443,760 - LU632_RS02245 0.62 -1.0 443,760 - LU632_RS02245 0.62 +0.4 443,760 - LU632_RS02245 0.62 +1.3 443,762 - LU632_RS02245 0.63 +0.4 443,795 + LU632_RS02245 0.70 -1.1 443,865 - LU632_RS02245 0.87 +0.8 443,869 + LU632_RS02245 0.88 +1.2 443,870 - LU632_RS02245 0.88 -0.1 443,927 + +0.2 443,927 + -0.9 443,927 + +0.2 443,928 - +0.9 443,928 - -2.3 443,928 - +0.1 443,959 + +0.1 444,022 + +0.1 444,022 + -1.1 444,022 + -1.4 444,023 - +0.6 444,397 + -0.3 444,398 - +0.2 444,401 + +0.0 444,416 + -2.5 444,416 + -0.7 444,417 - -0.4 444,418 + -0.1 444,493 + -0.1 444,597 - LU632_RS02250 0.18 +2.5 444,824 + LU632_RS02250 0.37 -0.2 444,825 - LU632_RS02250 0.37 -3.2 444,828 + LU632_RS02250 0.37 +0.5 444,829 - LU632_RS02250 0.37 -1.7 444,829 - LU632_RS02250 0.37 -0.5 444,830 + LU632_RS02250 0.37 +0.8 444,830 + LU632_RS02250 0.37 -0.1 444,831 - LU632_RS02250 0.37 -2.1 444,831 - LU632_RS02250 0.37 -0.4 444,847 + LU632_RS02250 0.39 -0.9 444,848 - LU632_RS02250 0.39 +0.1
Or see this region's nucleotide sequence