Experiment: plant=Melon; plant sample=M5; plant location=P2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02225 and rsmI are separated by 62 nucleotides
LU632_RS02225: LU632_RS02225 - penicillin-binding protein activator, at 438,840 to 440,888
_RS02225
LU632_RS02230: rsmI - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 440,951 to 441,808
rsmI
Position (kb) 440
441
442 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 440.947 kb on - strand at 440.947 kb on - strand at 440.947 kb on - strand at 440.987 kb on + strand at 440.987 kb on + strand at 440.987 kb on + strand at 440.988 kb on - strand at 441.079 kb on + strand, within rsmI at 441.079 kb on + strand, within rsmI at 441.080 kb on - strand, within rsmI at 441.089 kb on - strand, within rsmI at 441.089 kb on - strand, within rsmI at 441.102 kb on + strand, within rsmI at 441.103 kb on - strand, within rsmI at 441.138 kb on + strand, within rsmI at 441.139 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.203 kb on - strand, within rsmI at 441.234 kb on + strand, within rsmI at 441.320 kb on - strand, within rsmI at 441.320 kb on - strand, within rsmI at 441.321 kb on + strand, within rsmI at 441.386 kb on - strand, within rsmI at 441.386 kb on - strand, within rsmI at 441.450 kb on - strand, within rsmI at 441.457 kb on + strand, within rsmI at 441.458 kb on - strand, within rsmI at 441.515 kb on + strand, within rsmI at 441.516 kb on - strand, within rsmI at 441.778 kb on + strand at 441.783 kb on - strand at 441.783 kb on - strand at 442.226 kb on - strand at 442.226 kb on - strand at 442.226 kb on - strand at 442.261 kb on - strand at 442.281 kb on - strand at 442.317 kb on - strand at 442.333 kb on + strand at 442.391 kb on + strand at 442.392 kb on - strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.444 kb on + strand at 442.445 kb on - strand at 442.448 kb on + strand at 442.448 kb on + strand at 442.458 kb on - strand at 442.553 kb on + strand at 442.676 kb on - strand at 442.676 kb on - strand at 442.758 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.785 kb on + strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand at 442.786 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M5; plant location=P2 remove 440,947 - -1.0 440,947 - -0.2 440,947 - -0.8 440,987 + +1.5 440,987 + +0.2 440,987 + -2.2 440,988 - +0.2 441,079 + rsmI LU632_RS02230 0.15 -1.1 441,079 + rsmI LU632_RS02230 0.15 -1.0 441,080 - rsmI LU632_RS02230 0.15 -0.5 441,089 - rsmI LU632_RS02230 0.16 +0.1 441,089 - rsmI LU632_RS02230 0.16 -1.2 441,102 + rsmI LU632_RS02230 0.18 -1.0 441,103 - rsmI LU632_RS02230 0.18 -1.1 441,138 + rsmI LU632_RS02230 0.22 -0.5 441,139 - rsmI LU632_RS02230 0.22 +1.3 441,203 - rsmI LU632_RS02230 0.29 -0.6 441,203 - rsmI LU632_RS02230 0.29 -0.2 441,203 - rsmI LU632_RS02230 0.29 +1.0 441,234 + rsmI LU632_RS02230 0.33 +0.2 441,320 - rsmI LU632_RS02230 0.43 -0.5 441,320 - rsmI LU632_RS02230 0.43 +0.2 441,321 + rsmI LU632_RS02230 0.43 -3.0 441,386 - rsmI LU632_RS02230 0.51 -1.3 441,386 - rsmI LU632_RS02230 0.51 -0.2 441,450 - rsmI LU632_RS02230 0.58 +0.8 441,457 + rsmI LU632_RS02230 0.59 -2.0 441,458 - rsmI LU632_RS02230 0.59 +2.3 441,515 + rsmI LU632_RS02230 0.66 -0.8 441,516 - rsmI LU632_RS02230 0.66 -1.2 441,778 + -1.0 441,783 - -2.3 441,783 - -0.6 442,226 - -2.2 442,226 - -0.6 442,226 - -1.0 442,261 - +0.7 442,281 - -0.2 442,317 - +0.4 442,333 + -0.0 442,391 + -0.6 442,392 - -0.3 442,444 + +0.9 442,444 + +0.7 442,444 + -0.1 442,444 + +0.2 442,445 - -0.1 442,448 + -1.6 442,448 + -0.0 442,458 - -1.9 442,553 + +0.7 442,676 - +0.4 442,676 - -1.0 442,758 + -0.4 442,785 + -0.3 442,785 + +0.1 442,785 + +0.6 442,785 + +0.0 442,786 - -1.7 442,786 - +0.7 442,786 - -2.9 442,786 - -1.9 442,786 - +0.3
Or see this region's nucleotide sequence